Os05g0148000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0148000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.49 | 0.331 | 9.9 | -0.512 | 0.381 | 0.441 | 0.874 | 0.437 | 0.334 | 3.82 | 21 | 2 | -- | -- |
| 50.32 | 0.333 | 9.9 | -0.614 | 0.382 | 0.418 | 0.572 | -- | 0.313 | 4.18 | 21 | 2 | -- | -- |
| 51.04 | 0.335 | 9.9 | -0.582 | 0.388 | 0.41 | -- | 0.153 | 0.32 | 4.48 | 21 | 2 | -- | -- |
| 51.18 | 0.335 | 9.9 | -0.617 | 0.386 | 0.405 | -- | -- | 0.313 | 4.5 | 21 | 2 | -- | -- |
| 58.75 | 0.359 | 9.9 | -0.556 | -- | 0.33 | -- | 0.116 | 0.346 | -- | 21 | 2 | -- | -- |
| 58.74 | 0.359 | 9.88 | -0.516 | 0.319 | -- | 0.404 | -- | 0.405 | 5.25 | -- | -- | -- | -- |
| 59.09 | 0.36 | 9.88 | -0.515 | 0.324 | -- | -- | -- | 0.403 | 5.61 | -- | -- | -- | -- |
| 58.83 | 0.359 | 9.9 | -0.583 | -- | 0.327 | -- | -- | 0.34 | -- | 21.03 | 6 | -- | -- |
| 60.87 | 0.365 | 9.88 | -- | 0.361 | 0.323 | -- | -- | 0.398 | 4.74 | 21.01 | 10 | -- | -- |
| 64.54 | 0.375 | 9.89 | -0.504 | -- | -- | -- | -- | 0.411 | -- | -- | -- | -- | -- |
| 66.07 | 0.38 | 9.87 | -- | 0.316 | -- | -- | -- | 0.461 | 5.68 | -- | -- | -- | -- |
| 67.54 | 0.384 | 9.89 | -- | -- | 0.26 | -- | -- | 0.418 | -- | 21.1 | 7 | -- | -- |
| 71.25 | 0.394 | 9.87 | -- | -- | -- | -- | -- | 0.467 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.13 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 15 |
| 2 | 49.14 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 17 |
| 15 | 49.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 48 | 49.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 57 | 49.80 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 16 |
| 121 | 50.31 | temperature | 25 | 270 | < th | dose dependent | sin | 15 | NA |
| 125 | 50.34 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 10 |
| 134 | 50.41 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 18 |
| 160 | 50.57 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 21 |
| 187 | 50.64 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 10 |
| 210 | 50.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 232 | 50.83 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 12 |
| 287 | 51.00 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 23 |
| 300 | 51.01 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 21 |
| 301 | 51.01 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 306 | 51.02 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 307 | 51.02 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 308 | 51.02 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 311 | 51.03 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 314 | 51.04 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 332 | 51.10 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 333 | 51.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 335 | 51.12 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 10 |
| 336 | 51.12 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 16 |
| 358 | 51.19 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 13 |
| 359 | 51.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 457 | 51.49 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 23 |
| 468 | 51.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 499 | 51.60 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 18 |
| 538 | 51.68 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 10 |
| 564 | 51.73 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 18 |
| 624 | 51.86 | temperature | 20 | 10 | < th | dose independent | sin | 11 | NA |
| 651 | 51.90 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 23 |
| 693 | 51.98 | temperature | 20 | 10 | > th | dose independent | sin | 9 | NA |
| 834 | 52.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 909 | 52.34 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 934 | 52.36 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 936 | 52.36 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 942 | 52.37 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 961 | 52.38 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 962 | 52.38 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 973 | 52.39 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 975 | 52.39 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 23 |