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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0147600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.5 (0.0263) R2 : 0.801
β1 : 1.59 (0.0963) R2dD : 0.124 R2D : 0.108
β2 : 2.71 (0.0681) R2dC : 0.694 R2C : 0.68
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.181 (0.0561) R2dN8 : 0.0061 R2N8 : -0.0109
σ : 0.494
deviance : 111.41
__
_____
C
peak time of C : 19.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
102.72 0.472 7.38 5.59 2.69 363 0.906 762 0.187 19 15 90 -- --
103.92 0.478 5.5 1.68 2.7 1.75 0.869 -- 0.196 19 15 90 -- --
104.83 0.477 7.36 5.55 2.7 363 -- 763 0.191 19 14.98 91 -- --
105.88 0.482 5.5 1.66 2.7 1.69 -- -- 0.198 19 15 90 -- --
486.57 1.03 7.35 5.62 -- 364 -- 763 0.154 -- 14.85 144 -- --
109.82 0.491 5.5 1.61 2.7 -- 0.781 -- 0.179 19.1 -- -- -- --
111.41 0.494 5.5 1.59 2.71 -- -- -- 0.181 19.1 -- -- -- --
488.84 1.03 5.44 1.62 -- 2.08 -- -- 0.153 -- 15 90 -- --
176.85 0.623 5.54 -- 2.69 0.843 -- -- 0.00879 19.1 15 90 -- --
497.32 1.04 5.44 1.54 -- -- -- -- 0.132 -- -- -- -- --
178.25 0.625 5.54 -- 2.69 -- -- -- 0.00393 19.1 -- -- -- --
556.59 1.1 5.48 -- -- 1.27 -- -- -0.0314 -- 15 90 -- --
559.82 1.1 5.48 -- -- -- -- -- -0.0385 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.51 atmosphere 1010.0 270 < th dose independent rect. 15 10
2 93.82 atmosphere 1010.0 270 < th dose independent rect. 15 8
5 94.48 temperature 15.0 1440 > th dose independent rect. 8 16
7 94.77 temperature 30.0 90 < th dose dependent rect. 23 8
9 95.13 temperature 15.0 270 > th dose independent rect. 17 17
15 95.50 temperature 15.0 270 > th dose dependent rect. 10 6
17 95.60 wind 7.0 270 < th dose independent rect. 9 22
18 95.62 wind 7.0 270 < th dose independent rect. 10 7
23 95.76 wind 9.0 270 < th dose dependent rect. 10 7
35 96.41 temperature 30.0 270 < th dose independent rect. 6 14
43 96.63 temperature 30.0 270 < th dose independent rect. 15 19
52 96.79 temperature 15.0 270 > th dose independent rect. 15 10
54 96.84 temperature 30.0 10 < th dose dependent rect. 8 15
59 96.97 temperature 15.0 1440 > th dose independent rect. 8 6
74 97.22 atmosphere 995.0 30 > th dose dependent rect. 7 16
78 97.28 atmosphere 995.0 30 > th dose dependent rect. 23 8
83 97.33 temperature 15.0 270 > th dose independent rect. 15 8
89 97.43 atmosphere 1015.0 270 < th dose independent rect. 17 17
92 97.45 temperature 30.0 270 < th dose dependent rect. 6 13
111 97.68 wind 5.0 270 < th dose independent rect. 22 17
112 97.70 temperature 15.0 10 > th dose independent rect. 16 20
117 97.74 wind 5.0 90 < th dose independent rect. 23 8
126 97.83 atmosphere 1015.0 90 < th dose independent rect. 7 16
129 97.85 humidity 60.0 270 > th dose independent rect. 16 18
131 97.92 wind 5.0 270 < th dose independent rect. 11 3
141 98.02 wind 9.0 1440 < th dose independent rect. 24 8
142 98.02 wind 1.0 270 > th dose dependent rect. 6 3
146 98.03 humidity 50.0 10 > th dose dependent rect. 23 10
157 98.09 temperature 15.0 10 > th dose independent rect. 18 18
178 98.22 wind 5.0 720 < th dose independent rect. 3 11
196 98.33 wind 1.0 270 > th dose dependent rect. 5 5
202 98.35 radiation 30.0 90 < th dose dependent rect. 23 9
215 98.39 wind 9.0 270 < th dose dependent rect. 22 17
220 98.41 temperature 15.0 270 > th dose dependent rect. 16 8
233 98.49 wind 5.0 270 < th dose independent rect. 21 9
236 98.50 atmosphere 1010.0 720 < th dose independent rect. 14 5
258 98.60 atmosphere 1015.0 270 < th dose independent rect. 15 20
268 98.64 atmosphere 1010.0 10 < th dose independent rect. 16 10
269 98.64 atmosphere 995.0 90 > th dose independent rect. 7 16
271 98.64 humidity 50.0 270 > th dose independent rect. 14 21
273 98.65 humidity 90.0 270 < th dose independent rect. 10 6
275 98.66 temperature 15.0 270 > th dose independent rect. 10 6
288 98.69 temperature 15.0 10 > th dose independent rect. 20 16
289 98.69 temperature 20.0 30 < th dose dependent rect. 23 9
298 98.73 humidity 60.0 10 > th dose independent rect. 8 15
299 98.73 atmosphere 1015.0 270 < th dose dependent rect. 10 6
309 98.76 atmosphere 1010.0 270 < th dose independent rect. 10 6
310 98.76 temperature 25.0 10 > th dose dependent rect. 12 8
340 98.85 wind 1.0 90 > th dose dependent rect. 17 19
364 98.92 atmosphere 1015.0 270 < th dose dependent rect. 11 4
375 98.95 radiation 40.0 270 < th dose independent rect. 6 15
392 99.03 temperature 25.0 270 > th dose independent rect. 10 6
395 99.05 radiation 20.0 90 < th dose independent rect. 23 8
411 99.10 atmosphere 995.0 270 > th dose independent rect. 16 18
414 99.11 temperature 10.0 90 > th dose independent rect. 23 8
415 99.11 temperature 30.0 90 < th dose independent rect. 23 8
416 99.11 humidity 50.0 90 > th dose independent rect. 23 8
418 99.11 atmosphere 995.0 90 > th dose independent rect. 23 8
419 99.11 radiation 40.0 90 < th dose independent rect. 23 8
421 99.11 temperature 10.0 90 > th dose independent rect. 7 16
430 99.13 atmosphere 1015.0 270 < th dose independent rect. 14 22
432 99.13 temperature 25.0 10 > th dose dependent rect. 10 10
434 99.14 wind 9.0 270 < th dose dependent rect. 10 20
450 99.18 radiation 10.0 270 < th dose dependent rect. 21 9
453 99.20 wind 7.0 270 < th dose independent rect. 1 14
469 99.26 temperature 10.0 270 > th dose dependent rect. 2 13
484 99.31 precipitation 0.1 1440 < th dose independent rect. 10 3
486 99.31 precipitation 0.1 1440 < th dose dependent rect. 10 3
490 99.32 precipitation 0.1 90 < th dose independent rect. 23 8
492 99.32 precipitation 0.1 90 < th dose dependent rect. 23 8
496 99.33 wind 5.0 720 > th dose independent rect. 7 5
497 99.33 temperature 15.0 1440 > th dose independent rect. 13 5
501 99.34 wind 1.0 90 > th dose independent rect. 7 16
508 99.35 temperature 20.0 30 < th dose dependent rect. 13 19
518 99.38 radiation 10.0 10 < th dose independent rect. 23 9
544 99.42 wind 9.0 720 < th dose dependent rect. 4 10
551 99.44 wind 3.0 270 > th dose independent rect. 6 3
558 99.45 temperature 20.0 10 > th dose dependent rect. 12 6
574 99.47 temperature 20.0 30 < th dose dependent rect. 15 17
615 99.52 wind 1.0 10 > th dose dependent rect. 7 5
624 99.54 temperature 10.0 270 > th dose independent rect. 21 9
625 99.54 temperature 30.0 270 < th dose independent rect. 21 9
626 99.54 humidity 50.0 270 > th dose independent rect. 21 9
629 99.54 atmosphere 995.0 270 > th dose independent rect. 21 9
630 99.54 radiation 20.0 270 < th dose independent rect. 21 9
640 99.55 atmosphere 1010.0 270 < th dose independent rect. 11 4
663 99.58 atmosphere 1015.0 270 < th dose dependent rect. 12 2
693 99.63 precipitation 0.1 270 < th dose independent rect. 10 6
697 99.63 precipitation 0.1 270 < th dose dependent rect. 10 6
709 99.64 wind 7.0 270 < th dose independent rect. 20 22
722 99.67 atmosphere 1015.0 10 < th dose dependent rect. 12 6
737 99.70 temperature 10.0 1440 > th dose independent rect. 24 8
740 99.70 temperature 30.0 1440 < th dose independent rect. 24 8
744 99.70 humidity 50.0 1440 > th dose independent rect. 24 8
749 99.70 atmosphere 995.0 1440 > th dose independent rect. 24 8
750 99.70 humidity 60.0 270 > th dose independent rect. 6 14
757 99.70 temperature 10.0 270 > th dose dependent rect. 18 15
760 99.71 temperature 30.0 270 < th dose dependent rect. 6 4
802 99.78 temperature 15.0 1440 > th dose independent rect. 13 7
803 99.78 radiation 1.0 270 < th dose independent rect. 21 11
816 99.79 temperature 25.0 10 > th dose dependent rect. 12 19
820 99.80 radiation 40.0 270 < th dose independent rect. 17 17
825 99.80 temperature 10.0 270 > th dose dependent rect. 17 17
840 99.82 wind 9.0 30 < th dose dependent rect. 23 9
843 99.83 temperature 25.0 270 > th dose independent rect. 11 3
858 99.85 temperature 25.0 720 < th dose dependent rect. 12 1
900 99.87 temperature 15.0 1440 > th dose independent rect. 18 6
942 99.90 temperature 25.0 10 > th dose dependent rect. 12 17
968 99.93 precipitation 0.1 270 < th dose independent rect. 21 9
976 99.93 precipitation 0.1 270 < th dose dependent rect. 21 9
987 99.94 temperature 25.0 10 > th dose dependent rect. 12 14