Os05g0146700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0146700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.4 | 0.291 | 8.44 | -0.459 | 0.854 | -0.582 | 0.266 | -0.333 | 2.11 | 9.49 | 21.6 | 6597 | -- | -- |
| 38.58 | 0.289 | 8.44 | -0.496 | 0.846 | -0.503 | 0.256 | -- | 2.11 | 9.46 | 21.8 | 6650 | -- | -- |
| 38.66 | 0.29 | 8.44 | -0.455 | 0.853 | -0.577 | -- | -0.306 | 2.11 | 9.48 | 21.56 | 6603 | -- | -- |
| 38.79 | 0.29 | 8.45 | -0.519 | 0.851 | -0.533 | -- | -- | 2.1 | 9.46 | 21.5 | 6606 | -- | -- |
| 78.99 | 0.416 | 8.44 | -0.16 | -- | -0.339 | -- | -0.43 | 2.23 | -- | 21.56 | 6603 | -- | -- |
| 45.06 | 0.315 | 8.41 | -0.172 | 0.838 | -- | 0.236 | -- | 2.29 | 9.41 | -- | -- | -- | -- |
| 45.26 | 0.315 | 8.41 | -0.163 | 0.837 | -- | -- | -- | 2.29 | 9.4 | -- | -- | -- | -- |
| 79.64 | 0.417 | 8.45 | -0.25 | -- | -0.35 | -- | -- | 2.21 | -- | 21.19 | 5849 | -- | -- |
| 41.57 | 0.3 | 8.43 | -- | 0.864 | -0.326 | -- | -- | 2.21 | 9.29 | 22.4 | 2222 | -- | -- |
| 86.33 | 0.434 | 8.43 | -0.168 | -- | -- | -- | -- | 2.29 | -- | -- | -- | -- | -- |
| 45.96 | 0.317 | 8.4 | -- | 0.837 | -- | -- | -- | 2.31 | 9.42 | -- | -- | -- | -- |
| 81.16 | 0.421 | 8.44 | -- | -- | -0.293 | -- | -- | 2.23 | -- | 22.4 | 2963 | -- | -- |
| 87.07 | 0.436 | 8.43 | -- | -- | -- | -- | -- | 2.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 3 |
| 5 | 36.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 45 | 37.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 55 | 38.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 59 | 38.12 | temperature | 25 | 30 | > th | dose dependent | rect. | 20 | 23 |
| 63 | 38.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 15 |
| 72 | 38.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 75 | 38.22 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 77 | 38.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 80 | 38.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 86 | 38.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 110 | 38.43 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 114 | 38.44 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 139 | 38.51 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 145 | 38.53 | temperature | 20 | 10 | > th | dose dependent | sin | 3 | NA |
| 159 | 38.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 160 | 38.57 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 169 | 38.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 174 | 38.60 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 20 |
| 187 | 38.63 | radiation | 10 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 191 | 38.64 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 201 | 38.66 | temperature | 10 | 10 | > th | dose dependent | sin | 3 | NA |
| 203 | 38.67 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 206 | 38.67 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 211 | 38.68 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 226 | 38.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 231 | 38.71 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 4 |
| 233 | 38.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 261 | 38.76 | radiation | 30 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 274 | 38.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 325 | 38.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 349 | 38.85 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 360 | 38.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 369 | 38.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 375 | 38.87 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 384 | 38.88 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 395 | 38.89 | humidity | 60 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 406 | 38.90 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 421 | 38.92 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 450 | 38.94 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 464 | 38.95 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 506 | 38.98 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 509 | 38.99 | radiation | 10 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 511 | 38.99 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 530 | 39.01 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 536 | 39.01 | radiation | 10 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 541 | 39.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 553 | 39.02 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 570 | 39.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 574 | 39.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 583 | 39.04 | temperature | 20 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 598 | 39.05 | radiation | 10 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 604 | 39.06 | wind | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 607 | 39.06 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 620 | 39.07 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 621 | 39.07 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 640 | 39.07 | radiation | 30 | 43200 | < th | dose dependent | rect. | 13 | 4 |
| 652 | 39.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 683 | 39.09 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 12 |
| 718 | 39.09 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 742 | 39.11 | temperature | 20 | 14400 | < th | dose dependent | sin | 8 | NA |
| 752 | 39.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 878 | 39.15 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 937 | 39.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 939 | 39.16 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 966 | 39.16 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 979 | 39.17 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 994 | 39.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |