Os05g0145900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0145900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.47 | 0.33 | 10 | -1.75 | 1.15 | -0.565 | 0.197 | 2.02 | -0.615 | 5.05 | 9.993 | 1466 | -- | -- |
| 56.31 | 0.35 | 10 | -1.56 | 1.14 | -0.521 | 0.263 | -- | -0.558 | 5.07 | 10 | 1482 | -- | -- |
| 49.55 | 0.328 | 10 | -1.75 | 1.15 | -0.568 | -- | 2.04 | -0.615 | 5.03 | 10 | 1471 | -- | -- |
| 56.43 | 0.35 | 10 | -1.56 | 1.14 | -0.516 | -- | -- | -0.557 | 5.1 | 10.01 | 1482 | -- | -- |
| 117.36 | 0.505 | 10 | -1.69 | -- | -0.616 | -- | 1.64 | -0.595 | -- | 9.997 | 1421 | -- | -- |
| 62.7 | 0.371 | 10 | -1.56 | 1.14 | -- | 0.271 | -- | -0.465 | 5.24 | -- | -- | -- | -- |
| 62.88 | 0.371 | 10 | -1.56 | 1.14 | -- | -- | -- | -0.466 | 5.26 | -- | -- | -- | -- |
| 122.4 | 0.515 | 10 | -1.51 | -- | -0.543 | -- | -- | -0.539 | -- | 10.01 | 1423 | -- | -- |
| 120.46 | 0.511 | 10 | -- | 1.1 | -0.635 | -- | -- | -0.454 | 4.99 | 10 | 1501 | -- | -- |
| 130.74 | 0.534 | 10 | -1.52 | -- | -- | -- | -- | -0.437 | -- | -- | -- | -- | -- |
| 126.71 | 0.527 | 9.96 | -- | 1.11 | -- | -- | -- | -0.293 | 5.32 | -- | -- | -- | -- |
| 183.59 | 0.631 | 10 | -- | -- | -0.617 | -- | -- | -0.432 | -- | 10 | 1428 | -- | -- |
| 191.42 | 0.646 | 9.98 | -- | -- | -- | -- | -- | -0.269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.62 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 2 | 48.72 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 3 | 48.76 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 6 | 48.89 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 8 | 48.90 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 10 | 48.91 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 12 | 48.91 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 18 | 48.97 | radiation | 10 | 1440 | < th | dose dependent | sin | 23 | NA |
| 19 | 48.98 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 33 | 49.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 38 | 49.30 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 42 | 49.34 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 43 | 49.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 47 | 49.46 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 22 |
| 81 | 49.69 | radiation | 10 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 82 | 49.70 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 86 | 49.70 | radiation | 10 | 1440 | < th | dose dependent | rect. | 1 | 18 |
| 97 | 49.70 | radiation | 10 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 106 | 49.71 | radiation | 10 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 135 | 49.72 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 159 | 49.82 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 160 | 49.82 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 163 | 49.83 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 164 | 49.83 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 11 |
| 165 | 49.83 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 170 | 49.84 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 172 | 49.84 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 178 | 49.85 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 185 | 49.86 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 231 | 49.94 | radiation | 20 | 1440 | < th | dose independent | sin | 21 | NA |
| 238 | 49.98 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 244 | 49.99 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 262 | 50.02 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 300 | 50.08 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 321 | 50.13 | radiation | 20 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 326 | 50.14 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 329 | 50.14 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 354 | 50.14 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 22 |
| 380 | 50.15 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 494 | 50.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 498 | 50.22 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 526 | 50.28 | radiation | 10 | 1440 | < th | dose independent | sin | 16 | NA |
| 600 | 50.50 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 721 | 50.61 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 801 | 50.72 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 837 | 50.78 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 866 | 50.84 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 883 | 50.88 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 914 | 50.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 934 | 50.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |