Os05g0145600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pentatricopeptide repeat containing protein.
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Os05g0145600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pentatricopeptide repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.06 | 0.336 | 11.4 | -0.688 | 0.972 | 0.806 | 0.122 | -1.71 | -0.207 | 21.2 | 24 | 347 | -- | -- |
| 52.25 | 0.337 | 11.3 | -0.446 | 0.982 | 0.664 | 0.0459 | -- | -0.146 | 21.1 | 23.7 | 320 | -- | -- |
| 51.11 | 0.333 | 11.4 | -0.69 | 0.97 | 0.805 | -- | -1.67 | -0.209 | 21.2 | 23.95 | 347 | -- | -- |
| 52.17 | 0.336 | 11.3 | -0.434 | 1 | 0.634 | -- | -- | -0.138 | 21.1 | 23.8 | 327 | -- | -- |
| 86.57 | 0.433 | 11.3 | -0.874 | -- | 1.48 | -- | -1.63 | -0.26 | -- | 24.6 | 666 | -- | -- |
| 59.28 | 0.361 | 11.3 | -0.307 | 1.19 | -- | 0.0872 | -- | -0.0555 | 20.3 | -- | -- | -- | -- |
| 59.3 | 0.361 | 11.3 | -0.31 | 1.19 | -- | -- | -- | -0.0554 | 20.3 | -- | -- | -- | -- |
| 89.7 | 0.441 | 11.3 | -0.578 | -- | 1.3 | -- | -- | -0.184 | -- | 24.5 | 640 | -- | -- |
| 56.83 | 0.351 | 11.3 | -- | 1.03 | 0.52 | -- | -- | -0.081 | 20.9 | 24.05 | 328 | -- | -- |
| 137.76 | 0.548 | 11.3 | -0.318 | -- | -- | -- | -- | -0.0683 | -- | -- | -- | -- | -- |
| 61.83 | 0.368 | 11.3 | -- | 1.19 | -- | -- | -- | -0.0209 | 20.3 | -- | -- | -- | -- |
| 98.08 | 0.461 | 11.3 | -- | -- | 1.2 | -- | -- | -0.111 | -- | 24.6 | 627 | -- | -- |
| 140.42 | 0.553 | 11.3 | -- | -- | -- | -- | -- | -0.0331 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.88 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 4 | 48.09 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 5 | 48.10 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 13 |
| 10 | 48.35 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 3 |
| 16 | 48.44 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 19 | 48.47 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 21 | 48.49 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 28 | 48.54 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 84 | 49.03 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 90 | 49.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 13 |
| 92 | 49.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 20 |
| 94 | 49.07 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 10 |
| 100 | 49.07 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 17 |
| 118 | 49.14 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 120 | 49.14 | humidity | 90 | 14400 | > th | dose dependent | sin | 18 | NA |
| 130 | 49.17 | humidity | 80 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 139 | 49.20 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 142 | 49.22 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 174 | 49.27 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 184 | 49.28 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 187 | 49.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 188 | 49.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 190 | 49.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 196 | 49.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 233 | 49.36 | humidity | 80 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 267 | 49.44 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 322 | 49.56 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 328 | 49.57 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 334 | 49.58 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 390 | 49.66 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 393 | 49.66 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 395 | 49.67 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 431 | 49.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 455 | 49.73 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 462 | 49.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 505 | 49.78 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 518 | 49.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 523 | 49.80 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 555 | 49.85 | humidity | 90 | 14400 | > th | dose independent | sin | 18 | NA |
| 586 | 49.89 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 12 |
| 627 | 49.92 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 16 |
| 634 | 49.93 | humidity | 70 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 646 | 49.94 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 655 | 49.95 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 656 | 49.95 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 684 | 49.98 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 694 | 49.99 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 15 |
| 704 | 50.00 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 721 | 50.00 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 728 | 50.01 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 21 |
| 736 | 50.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 737 | 50.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 739 | 50.02 | humidity | 90 | 14400 | < th | dose independent | sin | 18 | NA |
| 744 | 50.02 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 772 | 50.04 | wind | 3 | 43200 | > th | dose independent | sin | 5 | NA |
| 774 | 50.04 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 780 | 50.04 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 790 | 50.05 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 794 | 50.05 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 814 | 50.06 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 901 | 50.10 | wind | 5 | 43200 | < th | dose dependent | sin | 5 | NA |
| 904 | 50.11 | wind | 3 | 43200 | < th | dose independent | sin | 5 | NA |
| 909 | 50.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 18 |
| 918 | 50.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 924 | 50.12 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 21 |
| 983 | 50.15 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 19 |
| 989 | 50.16 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 1 |