Os05g0145100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0145100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 264.33 | 0.764 | -0.611 | -11.3 | 0.255 | -138 | -0.019 | -433 | 0.145 | 21.2 | 1 | 7 | 11 | 1 |
| 462.4 | 1.01 | 3.13 | -0.681 | 0.405 | 5.93 | -1.24 | -- | -0.0408 | 19.7 | 1 | 7 | 11 | 1 |
| 321.67 | 0.835 | 1.45 | -5.23 | 0.207 | -138 | -- | -433 | 0.112 | 0.876 | 3.088 | 604 | 11.4 | 0.882 |
| 466.2 | 1.01 | 3.13 | -0.654 | 0.408 | 5.89 | -- | -- | -0.0448 | 20.6 | 1.701 | 21 | 11.1 | 1.1 |
| 324.17 | 0.839 | 1.46 | -5.22 | -- | -137 | -- | -433 | 0.0693 | -- | 3.053 | 604 | 11.3 | 0.888 |
| 496.96 | 1.05 | 3.13 | -0.754 | 0.376 | -- | -1.27 | -- | -0.0645 | 19.2 | -- | -- | -- | -- |
| 500.47 | 1.05 | 3.14 | -0.733 | 0.382 | -- | -- | -- | -0.0695 | 20.3 | -- | -- | -- | -- |
| 248.86 | 0.735 | 3.13 | -0.58 | -- | 5.54 | -- | -- | -0.057 | -- | 2.213 | 1006 | 11.1 | 0.15 |
| 240.95 | 0.723 | 3.1 | -- | 0.311 | 6.23 | -- | -- | 0.0584 | 20.9 | 1.322 | 973 | 11.1 | 0.846 |
| 508.57 | 1.05 | 3.13 | -0.735 | -- | -- | -- | -- | -0.0737 | -- | -- | -- | -- | -- |
| 514.62 | 1.06 | 3.12 | -- | 0.386 | -- | -- | -- | 0.0121 | 20.1 | -- | -- | -- | -- |
| 240.47 | 0.722 | 3.08 | -- | -- | 5.92 | -- | -- | 0.149 | -- | 1.214 | 1000 | 11.1 | 0.859 |
| 522.83 | 1.07 | 3.11 | -- | -- | -- | -- | -- | 0.00784 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 264.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 264.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 289.81 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 6 |
| 4 | 289.81 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 6 |
| 11 | 295.19 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 2 |
| 12 | 295.19 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 2 |
| 18 | 300.33 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 48 | 315.71 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 57 | 319.13 | humidity | 90 | 720 | > th | dose independent | rect. | 12 | 1 |
| 59 | 319.13 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 65 | 325.00 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 89 | 334.58 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 99 | 334.58 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 122 | 342.31 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 136 | 346.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 137 | 346.22 | radiation | 10 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 153 | 349.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 164 | 352.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 7 |
| 165 | 352.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 173 | 355.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 282 | 387.70 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 17 |
| 285 | 388.36 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 296 | 389.81 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 329 | 393.86 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 331 | 393.86 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 333 | 393.86 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 384 | 393.86 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 386 | 393.86 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 388 | 393.86 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 441 | 394.21 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 464 | 395.14 | radiation | 1 | 720 | < th | dose independent | sin | 22 | NA |
| 489 | 396.70 | radiation | 1 | 720 | < th | dose dependent | sin | 22 | NA |
| 495 | 397.14 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 533 | 398.22 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 631 | 405.00 | wind | 9 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 748 | 409.66 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 787 | 411.46 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 791 | 411.64 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 846 | 413.34 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 3 |
| 932 | 415.78 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 940 | 416.11 | humidity | 60 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 944 | 416.18 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 957 | 416.69 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 981 | 417.71 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 1 |