Os05g0144400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Serine/threonine protein phosphatase, BSU1 family protein.
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Os05g0144400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Serine/threonine protein phosphatase, BSU1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.44 | 0.242 | 12.3 | 0.558 | 0.0468 | -0.47 | 0.225 | -0.926 | 0.318 | 22.8 | 5.114 | 4148 | -- | -- |
| 26.87 | 0.241 | 12.3 | 0.586 | 0.0581 | -0.329 | 0.198 | -- | 0.312 | 22.7 | 5.003 | 4158 | -- | -- |
| 26.59 | 0.24 | 12.3 | 0.54 | 0.0541 | -0.472 | -- | -0.912 | 0.312 | 1.36 | 5.147 | 4121 | -- | -- |
| 26.96 | 0.242 | 12.3 | 0.551 | 0.0615 | -0.342 | -- | -- | 0.296 | 1.04 | 5.133 | 4119 | -- | -- |
| 26.76 | 0.241 | 12.3 | 0.555 | -- | -0.447 | -- | -0.832 | 0.32 | -- | 5.239 | 4227 | -- | -- |
| 28.62 | 0.251 | 12.3 | 0.676 | 0.0508 | -- | 0.243 | -- | 0.332 | 22.6 | -- | -- | -- | -- |
| 28.84 | 0.252 | 12.3 | 0.666 | 0.0526 | -- | -- | -- | 0.331 | 0.138 | -- | -- | -- | -- |
| 27.17 | 0.243 | 12.3 | 0.551 | -- | -0.333 | -- | -- | 0.304 | -- | 5.213 | 4215 | -- | -- |
| 30.92 | 0.259 | 12.4 | -- | 0.0453 | -0.522 | -- | -- | 0.146 | 0.0815 | 5.4 | 47520 | -- | -- |
| 29.02 | 0.252 | 12.3 | 0.668 | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
| 40.53 | 0.298 | 12.3 | -- | 0.0623 | -- | -- | -- | 0.257 | 0.728 | -- | -- | -- | -- |
| 30.7 | 0.258 | 12.4 | -- | -- | -0.567 | -- | -- | 0.158 | -- | 5.21 | 45072 | -- | -- |
| 40.77 | 0.298 | 12.3 | -- | -- | -- | -- | -- | 0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.31 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 2 | 25.32 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 3 | 25.37 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 15 |
| 6 | 25.43 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 13 | 25.50 | wind | 7.0 | 4320 | > th | dose independent | rect. | 19 | 15 |
| 18 | 25.51 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 15 |
| 19 | 25.51 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 27 | 25.55 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 17 |
| 28 | 25.55 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 12 |
| 44 | 25.60 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 12 |
| 52 | 25.61 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 17 |
| 62 | 25.63 | wind | 7.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 115 | 25.71 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 121 | 25.72 | wind | 9.0 | 4320 | < th | dose independent | sin | 11 | NA |
| 148 | 25.75 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 177 | 25.78 | wind | 7.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 295 | 25.90 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 309 | 25.91 | wind | 5.0 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 343 | 25.93 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 349 | 25.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 363 | 25.95 | wind | 5.0 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 375 | 25.96 | wind | 7.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 425 | 26.00 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 433 | 26.00 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 457 | 26.02 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 20 |
| 508 | 26.07 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 541 | 26.10 | wind | 7.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 542 | 26.10 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 571 | 26.11 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 17 | 22 |
| 580 | 26.12 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 585 | 26.13 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 604 | 26.14 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 608 | 26.15 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 616 | 26.15 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 644 | 26.16 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 4 |
| 664 | 26.17 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 672 | 26.18 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 676 | 26.18 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 723 | 26.20 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 724 | 26.20 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 725 | 26.20 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 726 | 26.20 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 729 | 26.20 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 2 | 7 |
| 748 | 26.21 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 749 | 26.21 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 752 | 26.21 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 758 | 26.21 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 20 | 7 |
| 760 | 26.21 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 19 | 8 |
| 767 | 26.21 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 768 | 26.21 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 800 | 26.22 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 877 | 26.23 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 890 | 26.24 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 913 | 26.24 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 11 | NA |
| 989 | 26.26 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 1 |