Os05g0143800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GH3 auxin-responsive promoter family protein.
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Os05g0143800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GH3 auxin-responsive promoter family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.02 | 0.632 | 7.51 | 4.41 | 1.36 | 2.72 | -0.246 | 2.32 | 1.51 | 21.9 | 0.7953 | 1450 | -- | -- |
| 183.34 | 0.631 | 7.48 | 4.55 | 1.24 | 2.27 | -0.215 | -- | 1.51 | 21.9 | 1.006 | 1466 | -- | -- |
| 181.23 | 0.627 | 7.51 | 4.41 | 1.36 | 2.73 | -- | 2.3 | 1.51 | 21.9 | 0.79 | 1452 | -- | -- |
| 183.15 | 0.63 | 7.47 | 4.6 | 1.26 | 2.3 | -- | -- | 1.53 | 21.7 | 1 | 1474 | -- | -- |
| 241.08 | 0.723 | 7.45 | 4.52 | -- | 3.42 | -- | 1.81 | 1.59 | -- | 1.126 | 1553 | -- | -- |
| 236.26 | 0.721 | 7.54 | 4.09 | 1.43 | -- | -0.378 | -- | 1.25 | 22 | -- | -- | -- | -- |
| 236.81 | 0.721 | 7.54 | 4.11 | 1.43 | -- | -- | -- | 1.25 | 22 | -- | -- | -- | -- |
| 242.1 | 0.725 | 7.42 | 4.69 | -- | 3.15 | -- | -- | 1.62 | -- | 1.428 | 1554 | -- | -- |
| 657.16 | 1.19 | 7.57 | -- | 1.48 | 0.941 | -- | -- | 1.11 | 22.3 | 178.6 | 8612 | -- | -- |
| 360.12 | 0.887 | 7.5 | 4.13 | -- | -- | -- | -- | 1.25 | -- | -- | -- | -- | -- |
| 681.64 | 1.22 | 7.65 | -- | 1.45 | -- | -- | -- | 0.797 | 22.2 | -- | -- | -- | -- |
| 701.33 | 1.24 | 7.61 | -- | -- | 1.06 | -- | -- | 0.804 | -- | 9.981 | 1616 | -- | -- |
| 809 | 1.33 | 7.61 | -- | -- | -- | -- | -- | 0.797 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.32 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 4 | 179.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 10 | 180.64 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 13 | 180.68 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 17 | 180.71 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 37 | 181.39 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 57 | 181.74 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 61 | 181.75 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 67 | 181.78 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 69 | 181.78 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 18 |
| 76 | 181.79 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 100 | 181.83 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 101 | 181.84 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 108 | 181.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 109 | 181.86 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 159 | 182.27 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 164 | 182.39 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 190 | 182.97 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 192 | 183.05 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 200 | 183.19 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 228 | 184.24 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 241 | 184.83 | radiation | 1.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 242 | 184.84 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 246 | 184.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 255 | 185.00 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 263 | 185.34 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 273 | 185.47 | radiation | 1.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 289 | 185.58 | radiation | 1.0 | 1440 | < th | dose independent | sin | 16 | NA |
| 290 | 185.58 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 291 | 185.59 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 310 | 185.63 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 355 | 186.01 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 368 | 186.15 | radiation | 1.0 | 1440 | > th | dose independent | sin | 16 | NA |
| 371 | 186.17 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 442 | 186.65 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 452 | 186.74 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 461 | 186.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 478 | 186.97 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 479 | 186.97 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 486 | 187.01 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 491 | 187.14 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 493 | 187.16 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 498 | 187.18 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 504 | 187.19 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 518 | 187.22 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 524 | 187.22 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 528 | 187.24 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 550 | 187.32 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 560 | 187.45 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 565 | 187.48 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 576 | 187.57 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 594 | 187.71 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 614 | 187.91 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 620 | 188.00 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 687 | 188.22 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 702 | 188.55 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 748 | 189.12 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 750 | 189.13 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 762 | 189.19 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 799 | 189.58 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 942 | 191.14 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 977 | 191.37 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 4 | 22 |
| 983 | 191.45 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 985 | 191.45 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 1000 | 191.63 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |