Os05g0143600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Jasmonate-induced protein.
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Os05g0143600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Jasmonate-induced protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.02 | 0.481 | 3.09 | 0.147 | 0.338 | -0.518 | -0.133 | 0.0568 | -0.0124 | 22.7 | 20 | 14 | -- | -- |
| 105.03 | 0.477 | 3.09 | 0.138 | 0.337 | -0.521 | -0.158 | -- | -0.0152 | 22.7 | 20.03 | 14 | -- | -- |
| 105.07 | 0.477 | 3.09 | 0.16 | 0.339 | -0.52 | -- | 0.0906 | -0.00944 | 22.5 | 20.09 | 13 | -- | -- |
| 105.11 | 0.477 | 3.09 | 0.144 | 0.339 | -0.525 | -- | -- | -0.0126 | 22.5 | 20.06 | 13 | -- | -- |
| 111.77 | 0.492 | 3.08 | 0.179 | -- | -0.599 | -- | 0.0852 | 0.00256 | -- | 20 | 9 | -- | -- |
| 115.82 | 0.505 | 3.12 | -0.00389 | 0.437 | -- | -0.254 | -- | -0.11 | 23.4 | -- | -- | -- | -- |
| 116.08 | 0.505 | 3.12 | 0.00714 | 0.44 | -- | -- | -- | -0.109 | 23.2 | -- | -- | -- | -- |
| 111.79 | 0.492 | 3.08 | 0.173 | -- | -0.616 | -- | -- | 0.0045 | -- | 20.04 | 13 | -- | -- |
| 105.65 | 0.479 | 3.09 | -- | 0.349 | -0.502 | -- | -- | -0.0289 | 22.5 | 20.06 | 13 | -- | -- |
| 128.15 | 0.529 | 3.11 | 0.0177 | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
| 116.08 | 0.504 | 3.12 | -- | 0.44 | -- | -- | -- | -0.109 | 23.2 | -- | -- | -- | -- |
| 112.55 | 0.494 | 3.09 | -- | -- | -0.59 | -- | -- | -0.0184 | -- | 20.09 | 13 | -- | -- |
| 128.16 | 0.528 | 3.11 | -- | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.19 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 23 |
| 3 | 99.97 | temperature | 20 | 10 | > th | dose independent | sin | 7 | NA |
| 4 | 100.16 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 7 |
| 9 | 100.67 | humidity | 90 | 90 | < th | dose independent | rect. | 2 | 4 |
| 10 | 100.73 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 14 | 100.96 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 11 |
| 20 | 101.24 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 11 |
| 29 | 101.40 | temperature | 20 | 10 | < th | dose independent | sin | 8 | NA |
| 33 | 101.56 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 10 |
| 41 | 101.73 | temperature | 20 | 90 | < th | dose independent | sin | 8 | NA |
| 46 | 101.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 57 | 101.96 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 9 |
| 66 | 102.18 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 14 |
| 79 | 102.36 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 23 |
| 84 | 102.39 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 92 | 102.47 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 14 |
| 106 | 102.59 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 11 |
| 126 | 102.72 | temperature | 20 | 270 | < th | dose independent | rect. | 2 | 1 |
| 140 | 102.86 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 5 |
| 146 | 102.93 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 11 |
| 163 | 103.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 12 |
| 191 | 103.16 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 1 | 5 |
| 210 | 103.26 | temperature | 20 | 90 | < th | dose dependent | rect. | 1 | 5 |
| 218 | 103.34 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 20 |
| 244 | 103.46 | temperature | 20 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 260 | 103.52 | temperature | 20 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 268 | 103.58 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 337 | 103.85 | temperature | 20 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 363 | 104.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 10 |
| 406 | 104.17 | humidity | 90 | 90 | < th | dose dependent | rect. | 2 | 4 |
| 408 | 104.17 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 437 | 104.28 | temperature | 20 | 10 | < th | dose independent | rect. | 2 | 5 |
| 456 | 104.32 | temperature | 20 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 461 | 104.33 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 14 |
| 469 | 104.35 | temperature | 20 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 470 | 104.36 | humidity | 90 | 90 | < th | dose independent | rect. | 2 | 1 |
| 485 | 104.40 | temperature | 25 | 10 | < th | dose dependent | sin | 8 | NA |
| 495 | 104.47 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 17 |
| 521 | 104.57 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 21 |
| 532 | 104.60 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 14 |
| 584 | 104.76 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 607 | 104.82 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 2 | 1 |
| 638 | 104.90 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 9 |
| 645 | 104.93 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 22 |
| 656 | 104.98 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 11 |
| 693 | 105.05 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 696 | 105.05 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 23 |
| 741 | 105.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 802 | 105.31 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 3 | 23 |
| 837 | 105.37 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 22 |
| 852 | 105.40 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 3 |
| 866 | 105.42 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 5 |
| 947 | 105.54 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 23 |