Os05g0143500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Blast and wounding induced mitogen-activated protein kinase.
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Os05g0143500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Blast and wounding induced mitogen-activated protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.2 | 0.258 | 12.7 | 0.205 | 1.27 | 0.72 | 0.41 | 0.205 | 0.258 | 6.16 | 29.2 | 90 | -- | -- |
| 30.27 | 0.256 | 12.7 | 0.229 | 1.28 | 0.706 | 0.433 | -- | 0.258 | 6.14 | 29.2 | 90 | -- | -- |
| 30.59 | 0.258 | 12.7 | 0.194 | 1.27 | 0.737 | -- | 0.326 | 0.256 | 6.16 | 29.3 | 93 | -- | -- |
| 30.74 | 0.258 | 12.7 | 0.239 | 1.28 | 0.722 | -- | -- | 0.263 | 6.15 | 29.4 | 90 | -- | -- |
| 88.66 | 0.439 | 12.7 | 0.415 | -- | 1.93 | -- | 0.608 | 0.393 | -- | 36.7 | 315 | -- | -- |
| 37.12 | 0.286 | 12.7 | 0.062 | 1.44 | -- | 0.511 | -- | 0.121 | 5.69 | -- | -- | -- | -- |
| 37.76 | 0.288 | 12.7 | 0.0647 | 1.44 | -- | -- | -- | 0.119 | 5.68 | -- | -- | -- | -- |
| 88.92 | 0.439 | 12.7 | 0.51 | -- | 1.94 | -- | -- | 0.419 | -- | 37.37 | 314 | -- | -- |
| 32.17 | 0.264 | 12.7 | -- | 1.3 | 0.726 | -- | -- | 0.198 | 6.08 | 45.43 | 61 | -- | -- |
| 145.39 | 0.563 | 12.7 | 0.11 | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
| 37.87 | 0.288 | 12.7 | -- | 1.44 | -- | -- | -- | 0.112 | 5.68 | -- | -- | -- | -- |
| 95.31 | 0.455 | 12.7 | -- | -- | 1.77 | -- | -- | 0.342 | -- | 53.83 | 313 | -- | -- |
| 145.71 | 0.563 | 12.7 | -- | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.27 | temperature | 15 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 3 | 29.61 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 5 | 29.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 21 |
| 10 | 29.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 23 |
| 12 | 29.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 16 | 29.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 39 | 30.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 47 | 30.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 61 | 30.25 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 70 | 30.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 100 | 30.52 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 113 | 30.58 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 168 | 30.79 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 179 | 30.82 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 200 | 30.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 216 | 30.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 231 | 30.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 244 | 30.99 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 258 | 31.04 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 279 | 31.09 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 13 |
| 294 | 31.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 18 |
| 374 | 31.32 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 430 | 31.43 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 452 | 31.48 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 474 | 31.53 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 15 |
| 505 | 31.57 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 530 | 31.62 | temperature | 25 | 270 | < th | dose dependent | sin | 22 | NA |
| 622 | 31.78 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 22 |
| 659 | 31.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 676 | 31.84 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 2 |
| 687 | 31.85 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 692 | 31.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 709 | 31.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 13 |
| 728 | 31.88 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 836 | 31.95 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 853 | 31.96 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 20 |
| 943 | 32.03 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 958 | 32.04 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 23 |