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Os05g0143400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GINS complex, Sld5 component family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.02 (0.0206) R2 : 0.342
β1 : 1.15 (0.0754) R2dD : 0.348 R2D : 0.292
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.223 (0.044) R2dN8 : 0.0496 R2N8 : -0.00557
σ : 0.387
deviance : 68.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.98 0.297 9.08 0.701 0.575 0.085 -0.628 -4.44 0.106 3.96 25.94 98 -- --
42.9 0.305 9.01 1.23 0.666 -0.323 0.151 -- 0.202 4.27 26.99 1293 -- --
40.65 0.297 9.07 0.757 0.585 0.163 -- -4.86 0.132 4.02 27.2 96 -- --
42.21 0.303 9.03 1.21 0.674 -0.273 -- -- 0.169 3.97 29.34 1466 -- --
50.78 0.332 9.01 1.25 -- -0.782 -- -0.556 0.324 -- 18.7 147 -- --
46.3 0.319 9.02 1.12 0.639 -- 0.0141 -- 0.206 4.09 -- -- -- --
46.3 0.319 9.02 1.12 0.639 -- -- -- 0.206 4.09 -- -- -- --
51.23 0.333 8.99 1.34 -- -0.892 -- -- 0.362 -- 18.5 161 -- --
78.74 0.413 9.05 -- 0.672 -0.135 -- -- 0.0571 4.01 32.7 1732 -- --
68.48 0.387 9.02 1.15 -- -- -- -- 0.223 -- -- -- -- --
79.58 0.417 9.05 -- 0.66 -- -- -- 0.0806 4.06 -- -- -- --
95.76 0.456 9.03 -- -- -0.541 -- -- 0.168 -- 20.6 157 -- --
103.33 0.474 9.05 -- -- -- -- -- 0.0952 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.73 wind 1.0 14400 > th dose independent rect. 20 2
2 36.99 precipitation 0.1 43200 > th dose dependent rect. 17 2
5 37.41 wind 1.0 14400 < th dose dependent rect. 20 2
7 37.48 wind 1.0 14400 < th dose independent rect. 20 1
13 37.88 precipitation 0.1 43200 < th dose independent rect. 17 2
14 37.88 precipitation 0.1 43200 < th dose dependent rect. 17 2
16 37.92 precipitation 0.1 43200 > th dose independent rect. 17 2
17 37.93 precipitation 0.1 43200 > th dose dependent rect. 20 1
19 37.98 precipitation 0.1 43200 > th dose dependent rect. 17 5
20 37.99 precipitation 0.1 43200 > th dose dependent rect. 17 7
30 38.45 radiation 10.0 43200 < th dose dependent rect. 8 1
36 38.63 precipitation 0.1 43200 > th dose independent rect. 20 1
37 38.64 precipitation 0.1 43200 < th dose independent rect. 20 1
38 38.64 precipitation 0.1 43200 < th dose dependent rect. 20 1
52 38.81 precipitation 0.1 43200 < th dose independent rect. 17 4
53 38.81 precipitation 0.1 43200 < th dose dependent rect. 17 4
54 38.83 precipitation 0.1 43200 > th dose independent rect. 17 4
57 38.92 humidity 50.0 14400 > th dose independent rect. 16 19
61 39.00 radiation 10.0 43200 < th dose dependent rect. 7 3
67 39.02 humidity 60.0 14400 < th dose dependent rect. 17 16
71 39.04 radiation 30.0 270 < th dose independent rect. 18 19
73 39.06 radiation 20.0 43200 > th dose independent rect. 11 1
75 39.09 wind 9.0 43200 > th dose dependent rect. 14 4
76 39.10 radiation 30.0 270 < th dose independent rect. 19 17
81 39.15 radiation 10.0 43200 < th dose dependent rect. 7 6
93 39.23 temperature 25.0 720 > th dose dependent rect. 20 15
99 39.28 humidity 50.0 14400 < th dose independent sin 11 NA
104 39.31 radiation 10.0 43200 > th dose independent rect. 7 3
113 39.35 humidity 60.0 14400 < th dose dependent rect. 17 3
117 39.37 radiation 30.0 270 < th dose independent rect. 5 8
118 39.37 humidity 50.0 14400 < th dose independent rect. 16 20
138 39.40 humidity 60.0 14400 < th dose dependent rect. 16 18
147 39.45 humidity 50.0 14400 < th dose independent rect. 15 18
149 39.46 humidity 50.0 14400 < th dose independent rect. 15 3
168 39.48 radiation 40.0 270 < th dose dependent rect. 18 18
169 39.49 wind 7.0 43200 > th dose independent rect. 12 2
173 39.50 humidity 50.0 14400 > th dose independent sin 11 NA
182 39.53 atmosphere 1000.0 43200 > th dose independent rect. 21 1
183 39.53 atmosphere 1000.0 43200 < th dose independent rect. 21 1
191 39.55 wind 9.0 43200 > th dose independent rect. 17 1
203 39.57 wind 7.0 43200 < th dose independent rect. 12 2
214 39.58 precipitation 0.1 43200 > th dose independent rect. 17 7
215 39.58 precipitation 0.1 43200 < th dose independent rect. 17 7
216 39.58 precipitation 0.1 43200 < th dose dependent rect. 17 7
223 39.60 precipitation 0.1 43200 > th dose dependent sin 16 NA
226 39.61 wind 9.0 43200 > th dose independent rect. 14 1
227 39.62 wind 9.0 43200 < th dose independent rect. 17 1
231 39.63 humidity 50.0 14400 > th dose independent rect. 16 1
236 39.63 wind 9.0 43200 > th dose dependent rect. 14 8
244 39.64 humidity 50.0 14400 > th dose independent rect. 15 10
262 39.65 humidity 50.0 14400 > th dose independent rect. 15 8
267 39.66 humidity 50.0 14400 > th dose independent rect. 15 5
269 39.66 humidity 50.0 14400 > th dose independent rect. 15 16
299 39.67 radiation 20.0 4320 < th dose independent rect. 15 17
325 39.70 wind 9.0 43200 > th dose dependent rect. 15 15
345 39.74 precipitation 0.1 43200 > th dose dependent rect. 19 5
362 39.78 humidity 60.0 14400 < th dose independent rect. 17 3
367 39.79 radiation 30.0 1440 < th dose independent rect. 8 4
389 39.82 radiation 30.0 1440 < th dose independent rect. 10 1
397 39.82 temperature 15.0 270 > th dose dependent rect. 23 9
399 39.83 radiation 10.0 43200 > th dose independent sin 7 NA
400 39.83 wind 9.0 43200 < th dose independent rect. 14 1
409 39.83 humidity 60.0 14400 < th dose independent rect. 17 16
419 39.84 wind 7.0 43200 > th dose dependent rect. 11 4
449 39.86 radiation 30.0 1440 < th dose independent rect. 16 20
479 39.89 precipitation 0.1 4320 < th dose independent rect. 16 2
482 39.89 precipitation 0.1 4320 < th dose dependent rect. 16 2
486 39.90 radiation 10.0 43200 < th dose independent rect. 9 1
516 39.92 wind 9.0 43200 > th dose dependent rect. 11 19
525 39.93 precipitation 0.1 43200 > th dose dependent rect. 7 17
533 39.94 radiation 30.0 1440 < th dose independent rect. 22 14
534 39.94 radiation 30.0 270 < th dose independent rect. 9 15
541 39.94 radiation 10.0 4320 > th dose dependent rect. 16 16
547 39.95 radiation 30.0 1440 < th dose independent rect. 24 12
573 39.96 temperature 25.0 720 > th dose dependent sin 8 NA
584 39.98 temperature 20.0 270 > th dose independent rect. 23 8
590 39.99 precipitation 0.1 4320 > th dose independent rect. 16 2
592 39.99 precipitation 0.1 4320 < th dose independent rect. 14 4
596 39.99 precipitation 0.1 4320 < th dose dependent rect. 14 4
606 40.00 temperature 25.0 270 > th dose dependent sin 2 NA
641 40.02 radiation 10.0 4320 < th dose independent rect. 6 1
648 40.03 temperature 20.0 270 > th dose independent rect. 23 19
651 40.03 wind 9.0 43200 > th dose dependent rect. 11 12
660 40.04 radiation 40.0 4320 < th dose dependent rect. 16 17
662 40.05 precipitation 0.1 4320 > th dose independent rect. 14 4
669 40.06 wind 9.0 43200 < th dose independent rect. 11 11
673 40.06 wind 9.0 43200 > th dose dependent rect. 14 1
716 40.10 humidity 60.0 4320 < th dose dependent sin 13 NA
741 40.12 wind 9.0 43200 < th dose independent rect. 11 19
744 40.13 humidity 60.0 4320 < th dose independent rect. 12 1
782 40.15 precipitation 0.1 43200 > th dose independent rect. 19 5
790 40.15 wind 9.0 43200 > th dose independent rect. 11 12
805 40.16 temperature 25.0 720 > th dose independent rect. 6 5
817 40.17 temperature 25.0 1440 > th dose dependent rect. 8 2
822 40.17 radiation 1.0 4320 > th dose dependent rect. 18 13
829 40.18 precipitation 0.1 43200 < th dose independent rect. 19 5
839 40.18 precipitation 0.1 43200 < th dose dependent rect. 19 5
853 40.19 wind 9.0 43200 > th dose independent rect. 15 16
855 40.19 wind 9.0 43200 > th dose independent rect. 11 19
862 40.19 temperature 25.0 270 > th dose dependent rect. 21 20
867 40.20 wind 9.0 43200 > th dose independent rect. 14 8
878 40.20 radiation 1.0 4320 > th dose dependent rect. 4 3
885 40.20 radiation 40.0 270 < th dose dependent rect. 5 8
892 40.20 temperature 25.0 270 > th dose dependent rect. 23 18
910 40.21 wind 9.0 43200 > th dose dependent sin 15 NA
931 40.22 wind 9.0 43200 > th dose dependent rect. 11 7
934 40.23 wind 9.0 43200 > th dose independent rect. 14 4
939 40.23 radiation 10.0 4320 < th dose independent rect. 22 9
987 40.25 wind 9.0 43200 < th dose independent rect. 14 8