Os05g0142900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0142900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 370.82 | 0.905 | 4.02 | 0.284 | 0.283 | -2.36 | -0.507 | -2.49 | 0.245 | 12 | 1.358 | 4503 | -- | -- |
| 374.44 | 0.901 | 4.08 | -0.115 | 0.276 | -2.01 | -0.0693 | -- | 0.168 | 11.6 | 1.676 | 4540 | -- | -- |
| 371.65 | 0.898 | 4.02 | 0.197 | 0.271 | -2.34 | -- | -2.16 | 0.236 | 11.9 | 1.341 | 4519 | -- | -- |
| 374.06 | 0.901 | 4.07 | -0.0771 | 0.286 | -1.97 | -- | -- | 0.158 | 12.1 | 2.03 | 4533 | -- | -- |
| 374.39 | 0.901 | 4.04 | 0.126 | -- | -2.47 | -- | -2 | 0.207 | -- | 1.38 | 4547 | -- | -- |
| 430.27 | 0.972 | 3.99 | 0.404 | 0.794 | -- | 0.0619 | -- | 0.526 | 13.1 | -- | -- | -- | -- |
| 430.29 | 0.971 | 3.99 | 0.406 | 0.794 | -- | -- | -- | 0.527 | 13.1 | -- | -- | -- | -- |
| 377.61 | 0.905 | 4.09 | -0.112 | -- | -2.19 | -- | -- | 0.109 | -- | 2.025 | 4564 | -- | -- |
| 374.21 | 0.901 | 4.07 | -- | 0.292 | -1.94 | -- | -- | 0.169 | 12.2 | 2.04 | 4533 | -- | -- |
| 469.42 | 1.01 | 4 | 0.376 | -- | -- | -- | -- | 0.511 | -- | -- | -- | -- | -- |
| 434.64 | 0.975 | 4 | -- | 0.787 | -- | -- | -- | 0.481 | 13.1 | -- | -- | -- | -- |
| 377.9 | 0.905 | 4.08 | -- | -- | -2.17 | -- | -- | 0.137 | -- | 2.123 | 4563 | -- | -- |
| 473.15 | 1.02 | 4.01 | -- | -- | -- | -- | -- | 0.469 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 357.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 5 | 361.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 10 | 361.27 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 13 | 361.45 | radiation | 1 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 19 | 361.96 | radiation | 1 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 21 | 362.04 | radiation | 1 | 4320 | < th | dose independent | rect. | 19 | 12 |
| 22 | 362.07 | radiation | 1 | 4320 | < th | dose independent | rect. | 21 | 10 |
| 40 | 362.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 78 | 364.51 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 15 |
| 79 | 364.54 | radiation | 1 | 4320 | > th | dose independent | sin | 10 | NA |
| 84 | 364.89 | radiation | 1 | 4320 | < th | dose independent | sin | 10 | NA |
| 88 | 365.13 | wind | 5 | 14400 | > th | dose independent | rect. | 23 | 16 |
| 93 | 365.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 96 | 365.39 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 99 | 365.42 | wind | 5 | 14400 | > th | dose independent | rect. | 21 | 18 |
| 133 | 365.87 | wind | 5 | 14400 | < th | dose independent | rect. | 23 | 16 |
| 138 | 366.11 | wind | 5 | 14400 | < th | dose independent | rect. | 21 | 18 |
| 152 | 366.42 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 156 | 366.55 | wind | 5 | 14400 | > th | dose dependent | rect. | 21 | 18 |
| 169 | 366.95 | humidity | 60 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 201 | 367.44 | humidity | 60 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 206 | 367.51 | radiation | 1 | 4320 | < th | dose dependent | rect. | 21 | 10 |
| 208 | 367.53 | radiation | 1 | 4320 | < th | dose dependent | rect. | 19 | 12 |
| 248 | 367.95 | wind | 5 | 14400 | > th | dose independent | sin | 4 | NA |
| 255 | 368.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 265 | 368.21 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 266 | 368.22 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 272 | 368.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 296 | 368.54 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 298 | 368.56 | wind | 5 | 14400 | > th | dose dependent | sin | 5 | NA |
| 304 | 368.66 | wind | 5 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 306 | 368.67 | wind | 5 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 324 | 368.85 | wind | 5 | 14400 | < th | dose independent | sin | 4 | NA |
| 331 | 368.92 | humidity | 70 | 43200 | < th | dose dependent | rect. | 24 | 11 |
| 338 | 368.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 340 | 368.99 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 369 | 369.02 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 374 | 369.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 375 | 369.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 392 | 369.18 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 393 | 369.19 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 397 | 369.20 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 400 | 369.21 | radiation | 1 | 4320 | < th | dose dependent | sin | 9 | NA |
| 452 | 369.40 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 551 | 370.06 | radiation | 30 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 553 | 370.06 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 599 | 370.19 | humidity | 60 | 43200 | < th | dose independent | sin | 8 | NA |
| 603 | 370.19 | wind | 9 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 621 | 370.26 | wind | 3 | 14400 | > th | dose dependent | rect. | 9 | 3 |
| 675 | 370.57 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 693 | 370.61 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 705 | 370.67 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 723 | 370.68 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 739 | 370.78 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 775 | 370.85 | radiation | 20 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 815 | 370.90 | wind | 5 | 14400 | > th | dose dependent | rect. | 6 | 9 |
| 820 | 370.94 | radiation | 30 | 43200 | < th | dose independent | sin | 20 | NA |
| 822 | 370.95 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 824 | 370.96 | wind | 9 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 837 | 371.04 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 854 | 371.09 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 20 |
| 887 | 371.17 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 893 | 371.19 | radiation | 30 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 894 | 371.19 | radiation | 30 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 913 | 371.22 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 15 |
| 922 | 371.28 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 953 | 371.42 | wind | 9 | 14400 | > th | dose dependent | rect. | 1 | 13 |
| 967 | 371.47 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 997 | 371.51 | radiation | 30 | 43200 | < th | dose independent | no | NA | NA |