Os05g0142400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0142400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 463.46 | 1.01 | 10.8 | -1.45 | 8.28 | 5.47 | 4.59 | 2.8 | 0.00106 | 18.8 | 26.16 | 78 | 0.832 | -- |
| 474.95 | 1.02 | 10.8 | -1.13 | 8.6 | 5.64 | 3.87 | -- | 0.101 | 18.7 | 26.83 | 72 | 0.897 | -- |
| 504.77 | 1.05 | 10.8 | -1.19 | 8.68 | 5.8 | -- | 0.258 | 0.00151 | 18.8 | 26.9 | 96 | 0.914 | -- |
| 501.15 | 1.04 | 10.8 | -1.17 | 8.38 | 5.54 | -- | -- | 0.108 | 18.8 | 26.3 | 83 | 0.828 | -- |
| 1540.86 | 1.84 | 10.8 | -2.22 | -- | -6.58 | -- | -3.62 | -1.03 | -- | 66.43 | 1289 | 2.61e-07 | -- |
| 811.03 | 1.34 | 11 | -2.04 | 6.88 | -- | 3.68 | -- | -0.858 | 19.5 | -- | -- | -- | -- |
| 848.48 | 1.36 | 10.9 | -2.12 | 6.88 | -- | -- | -- | -0.852 | 19.5 | -- | -- | -- | -- |
| 1348.41 | 1.71 | 10.4 | -3.7 | -- | -8.46 | -- | -- | -0.299 | -- | 124 | 1751 | 0.799 | -- |
| 534.82 | 1.08 | 10.7 | -- | 8.54 | 6.07 | -- | -- | 0.294 | 18.8 | 26.3 | 93 | 0.851 | -- |
| 3378.69 | 2.72 | 10.8 | -2.23 | -- | -- | -- | -- | -0.961 | -- | -- | -- | -- | -- |
| 967.37 | 1.45 | 10.9 | -- | 6.9 | -- | -- | -- | -0.616 | 19.5 | -- | -- | -- | -- |
| 1195.06 | 1.61 | 10.8 | -- | -- | -7.46 | -- | -- | -0.882 | -- | 161 | 2081 | 3.88 | -- |
| 3509.85 | 2.77 | 10.7 | -- | -- | -- | -- | -- | -0.714 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 480.67 | temperature | 25 | 90 | < th | dose dependent | sin | 7 | NA |
| 3 | 484.09 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 4 | 489.67 | temperature | 30 | 10 | < th | dose dependent | sin | 7 | NA |
| 5 | 489.79 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 10 |
| 13 | 498.15 | temperature | 15 | 90 | > th | dose dependent | sin | 8 | NA |
| 17 | 498.86 | temperature | 10 | 10 | > th | dose dependent | sin | 7 | NA |
| 70 | 522.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 73 | 524.56 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 124 | 539.04 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 11 |
| 160 | 549.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 5 |
| 176 | 552.26 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 9 |
| 255 | 563.22 | temperature | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 264 | 564.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 291 | 566.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 293 | 566.88 | temperature | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 330 | 570.36 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 15 |
| 355 | 571.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 444 | 578.42 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 13 |
| 707 | 592.02 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 23 |
| 759 | 594.61 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 23 |
| 766 | 594.85 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 20 |
| 787 | 595.82 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 809 | 596.89 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 23 |
| 810 | 596.89 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 920 | 602.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 15 |