FiT-DB / Search/ Help/ Sample detail

Os05g0142000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0338) R2 : 0.728
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.97 (0.0879) R2dC : 0.32 R2C : 0.439
β3 : -2.82 (0.145) R2dE : 0.252 R2E : 0.399
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.281 (0.073) R2dN8 : 0.014 R2N8 : 0.0311
σ : 0.631
deviance : 183.32
__
_____
C
peak time of C : 15.8
E
wheather : radiation
threshold : 0.45
memory length : 4484
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
181.34 0.633 11.2 0.0581 2.02 -3.12 -0.709 -1.38 0.287 15.9 0.5392 4459 -- --
182.01 0.628 11.2 -0.135 1.98 -2.89 -0.67 -- 0.292 15.9 0.4964 4491 -- --
181.85 0.628 11.2 0.0189 1.95 -3.19 -- -1.4 0.304 15.9 0.4185 4480 -- --
182.76 0.63 11.2 -0.163 1.96 -2.89 -- -- 0.283 15.9 0.4601 4485 -- --
233.89 0.712 11.2 -0.0467 -- -4.39 -- -0.2 0.123 -- 1.372 4794 -- --
312.07 0.828 11.1 0.77 2.39 -- -0.431 -- 0.745 15.4 -- -- -- --
312.66 0.828 11.1 0.762 2.39 -- -- -- 0.742 15.3 -- -- -- --
232.41 0.71 11.2 -0.333 -- -4.54 -- -- 0.0765 -- 1.254 4795 -- --
183.32 0.631 11.2 -- 1.97 -2.82 -- -- 0.281 15.8 0.45 4484 -- --
633.44 1.18 11.1 0.661 -- -- -- -- 0.679 -- -- -- -- --
327.97 0.847 11.1 -- 2.37 -- -- -- 0.657 15.3 -- -- -- --
235.39 0.715 11.2 -- -- -4.42 -- -- 0.118 -- 1.357 4794 -- --
644.97 1.19 11.1 -- -- -- -- -- 0.606 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.10 radiation 1 43200 < th dose independent rect. 18 6
2 160.13 radiation 1 43200 < th dose independent rect. 18 10
4 160.17 radiation 1 43200 < th dose independent rect. 18 2
7 160.18 radiation 1 43200 < th dose independent rect. 18 8
11 161.16 radiation 1 43200 < th dose dependent rect. 2 3
15 162.10 radiation 1 43200 < th dose dependent rect. 21 8
20 162.47 humidity 90 43200 > th dose independent rect. 20 1
23 163.05 radiation 1 43200 > th dose independent rect. 18 1
44 164.33 humidity 90 43200 < th dose independent rect. 19 1
46 164.80 humidity 90 43200 > th dose independent rect. 22 1
47 164.83 radiation 30 43200 < th dose dependent rect. 21 8
55 165.55 radiation 1 43200 < th dose dependent rect. 18 6
57 165.58 radiation 1 43200 < th dose dependent rect. 18 4
59 165.59 radiation 1 43200 < th dose dependent rect. 18 1
62 165.59 radiation 1 43200 < th dose dependent rect. 18 8
66 165.84 atmosphere 1005 43200 > th dose independent rect. 12 2
83 166.34 atmosphere 1005 43200 < th dose independent rect. 12 2
91 166.69 humidity 90 43200 > th dose independent rect. 19 4
106 167.36 humidity 80 43200 < th dose independent rect. 12 6
143 168.39 atmosphere 1005 43200 > th dose independent rect. 15 2
154 168.60 humidity 80 43200 < th dose independent rect. 15 2
163 168.79 humidity 80 43200 < th dose independent rect. 12 1
182 169.12 humidity 80 43200 > th dose independent rect. 12 6
207 169.36 radiation 20 43200 < th dose independent rect. 8 1
221 169.58 atmosphere 1005 43200 > th dose independent sin 21 NA
288 170.44 atmosphere 1015 43200 < th dose dependent rect. 9 2
289 170.46 humidity 80 43200 > th dose independent rect. 12 1
302 170.57 atmosphere 1005 43200 < th dose independent sin 21 NA
335 170.73 wind 5 43200 < th dose independent rect. 11 5
364 170.92 wind 5 43200 > th dose independent rect. 11 6
377 170.98 atmosphere 1005 43200 > th dose independent rect. 2 17
389 171.04 radiation 1 43200 < th dose dependent rect. 18 17
391 171.06 temperature 25 4320 > th dose independent rect. 10 2
489 171.47 radiation 1 43200 < th dose dependent rect. 7 22
506 171.54 radiation 1 43200 < th dose dependent sin 13 NA
553 171.73 radiation 1 43200 < th dose dependent rect. 9 1
705 172.21 radiation 1 43200 < th dose dependent rect. 7 12
707 172.21 radiation 1 43200 < th dose dependent rect. 7 15
716 172.23 atmosphere 1005 43200 < th dose independent rect. 2 17
737 172.30 wind 5 43200 > th dose independent rect. 13 2
784 172.42 radiation 20 43200 < th dose independent rect. 24 10
785 172.42 radiation 20 43200 < th dose independent rect. 22 12
786 172.42 radiation 20 43200 < th dose independent rect. 20 14
787 172.42 radiation 20 43200 < th dose independent rect. 18 16
871 172.58 radiation 1 43200 < th dose dependent rect. 21 14
879 172.59 radiation 1 43200 < th dose dependent rect. 23 12
887 172.60 radiation 1 43200 < th dose dependent rect. 1 10
890 172.61 radiation 30 43200 < th dose independent rect. 7 7
893 172.61 radiation 1 43200 < th dose dependent rect. 4 7
910 172.62 radiation 1 43200 < th dose dependent rect. 1 23
912 172.62 radiation 1 43200 < th dose dependent rect. 21 23
913 172.62 radiation 1 43200 < th dose dependent rect. 23 23
919 172.63 radiation 1 43200 < th dose dependent no NA NA
921 172.63 radiation 1 43200 < th dose dependent rect. 3 16
982 172.67 radiation 30 43200 < th dose independent rect. 24 14
983 172.67 radiation 30 43200 < th dose independent rect. 18 20