Os05g0141400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : tRNA/rRNA methyltransferase, SpoU domain containing protein.
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Os05g0141400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : tRNA/rRNA methyltransferase, SpoU domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.75 | 0.375 | 8.21 | 1.06 | 0.641 | 1.21 | -0.401 | 0.465 | 0.0957 | 17.4 | 7.2 | 269 | 6.82 | 20 |
| 63.97 | 0.373 | 8.21 | 1.08 | 0.651 | 1.21 | -0.271 | -- | 0.088 | 17.5 | 7.4 | 268 | 6.82 | 20 |
| 63.83 | 0.372 | 8.21 | 1.09 | 0.618 | 1.21 | -- | 0.174 | 0.0929 | 17.5 | 7.458 | 269 | 6.8 | 19.9 |
| 63.87 | 0.372 | 8.21 | 1.1 | 0.624 | 1.2 | -- | -- | 0.0936 | 17.5 | 7.411 | 271 | 6.78 | 20 |
| 71.39 | 0.394 | 8.19 | 1.19 | -- | 1.63 | -- | 0.317 | 0.173 | -- | 13.87 | 297 | 6.67 | 19.5 |
| 93.22 | 0.453 | 8.25 | 1.18 | 1.38 | -- | 0.222 | -- | 0.0354 | 18.2 | -- | -- | -- | -- |
| 93.34 | 0.452 | 8.24 | 1.18 | 1.38 | -- | -- | -- | 0.0363 | 18.1 | -- | -- | -- | -- |
| 69.5 | 0.388 | 8.2 | 1.21 | -- | 1.43 | -- | -- | 0.116 | -- | 18 | 392 | 5.85 | 19.3 |
| 94.08 | 0.452 | 8.22 | -- | 0.582 | 1.3 | -- | -- | 0.0248 | 17.4 | 6.9 | 281 | 6.77 | 19.9 |
| 192.04 | 0.648 | 8.22 | 1.14 | -- | -- | -- | -- | 0.00565 | -- | -- | -- | -- | -- |
| 129.79 | 0.533 | 8.27 | -- | 1.36 | -- | -- | -- | -0.0947 | 18.2 | -- | -- | -- | -- |
| 100.01 | 0.466 | 8.19 | -- | -- | 1.41 | -- | -- | -0.0185 | -- | 7.5 | 409 | 5.43 | 19.7 |
| 226.17 | 0.702 | 8.25 | -- | -- | -- | -- | -- | -0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.57 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 2 | 64.61 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 18 |
| 9 | 65.77 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 10 | 65.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 11 | 65.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 13 | 66.20 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 14 | 66.23 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 15 | 66.25 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 16 | 66.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 17 | 66.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 21 | 66.39 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 29 | 66.74 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 31 | 66.74 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 32 | 66.74 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 35 | 66.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 36 | 66.74 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 37 | 66.74 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 40 | 66.74 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 46 | 66.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 47 | 66.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 49 | 67.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 51 | 67.01 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 52 | 67.01 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 54 | 67.01 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 55 | 67.01 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 56 | 67.01 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 57 | 67.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 72 | 67.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 19 |
| 74 | 67.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 76 | 67.14 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 102 | 67.56 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 106 | 67.62 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 115 | 67.72 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 120 | 67.84 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 132 | 67.89 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 133 | 67.89 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 162 | 68.17 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 163 | 68.17 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 168 | 68.23 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 189 | 68.51 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 190 | 68.55 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 196 | 68.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 198 | 68.60 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 199 | 68.60 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 202 | 68.60 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 203 | 68.60 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 205 | 68.60 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 209 | 68.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 213 | 68.65 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 216 | 68.67 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 217 | 68.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 7 |
| 220 | 68.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 237 | 68.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 238 | 68.82 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 239 | 68.82 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 241 | 68.83 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 244 | 68.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 245 | 68.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 16 |
| 246 | 68.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 250 | 68.86 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 256 | 68.94 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 271 | 68.97 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 279 | 69.05 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 17 |
| 280 | 69.05 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 304 | 69.22 | radiation | 40.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 308 | 69.25 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 324 | 69.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 8 |
| 326 | 69.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 358 | 69.41 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 359 | 69.41 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 360 | 69.41 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 361 | 69.41 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 362 | 69.41 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 367 | 69.41 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 368 | 69.41 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 370 | 69.41 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 432 | 69.57 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 465 | 69.69 | wind | 9.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 579 | 70.27 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 618 | 70.40 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 620 | 70.41 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 627 | 70.43 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 634 | 70.48 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 638 | 70.49 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 647 | 70.53 | wind | 9.0 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 656 | 70.58 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 15 |
| 660 | 70.60 | humidity | 50.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 688 | 70.67 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 742 | 70.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 747 | 70.91 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 756 | 70.98 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 770 | 71.04 | radiation | 10.0 | 10 | < th | dose dependent | sin | 11 | NA |
| 818 | 71.20 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 822 | 71.21 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 9 |
| 829 | 71.24 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 850 | 71.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 861 | 71.29 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 895 | 71.38 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 9 |
| 896 | 71.38 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 15 |
| 897 | 71.38 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 15 |
| 908 | 71.39 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 920 | 71.44 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |