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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0141300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.31 (0.0608) R2 : 0.688
β1 : 7.4 (0.253) R2dD : 0.817 R2D : 0.211
β2 : 1.7 (0.142) R2dC : 0.0985 R2C : 0.0134
β3 : -4.41 (0.274) R2dE : 0.261 R2E : -0.351
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.25 (0.139) R2dN8 : 0.287 R2N8 : -0.0699
σ : 1.11
deviance : 571.32
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_____
C
peak time of C : 23.1
E
wheather : temperature
threshold : 11.71
memory length : 5351
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
556.2 1.11 5.2 8.04 1.55 -4.01 1.23 2.99 2.39 23.1 14.72 4516 -- --
564.79 1.11 5.3 7.52 1.67 -4.13 1.2 -- 2.29 23.2 14.51 5444 -- --
562.7 1.1 5.19 8.05 1.54 -4.02 -- 3.06 2.4 23.1 14.7 4510 -- --
571.32 1.11 5.31 7.4 1.7 -4.41 -- -- 2.25 23.1 11.71 5351 -- --
704.75 1.24 5.29 6.47 -- -4.7 -- 1.87 2.07 -- 14.7 4545 -- --
890.43 1.4 5.5 5.36 1.48 -- 1.04 -- 1.36 22.9 -- -- -- --
894.92 1.4 5.51 5.32 1.47 -- -- -- 1.36 22.9 -- -- -- --
707.8 1.24 5.33 6.21 -- -4.67 -- -- 1.99 -- 14.7 4545 -- --
1587.43 1.87 5.58 -- 1.19 -2.24 -- -- 1.03 21.6 11.71 5351 -- --
1029.66 1.5 5.47 5.35 -- -- -- -- 1.37 -- -- -- -- --
1640.66 1.89 5.64 -- 1.52 -- -- -- 0.763 23.1 -- -- -- --
1662.09 1.91 5.54 -- -- -2.19 -- -- 1.06 -- 21.89 1559 -- --
1784.77 1.97 5.6 -- -- -- -- -- 0.772 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 524.81 wind 9 43200 > th dose dependent rect. 19 11
6 535.19 wind 9 43200 > th dose independent rect. 19 11
9 537.53 wind 9 43200 > th dose dependent rect. 19 6
17 542.19 wind 9 43200 < th dose independent rect. 19 11
23 544.16 radiation 10 14400 < th dose independent rect. 17 3
24 544.19 radiation 10 14400 < th dose independent rect. 17 12
25 544.22 radiation 10 14400 < th dose independent rect. 17 7
26 544.26 radiation 10 14400 < th dose independent rect. 17 5
32 544.47 wind 9 43200 > th dose independent rect. 19 6
45 546.46 temperature 30 4320 < th dose dependent rect. 17 1
50 548.20 temperature 10 4320 > th dose dependent rect. 15 3
53 548.71 temperature 10 4320 > th dose dependent rect. 17 1
73 550.13 wind 9 43200 < th dose independent rect. 19 6
76 550.41 temperature 10 4320 > th dose dependent rect. 11 9
101 551.12 wind 9 43200 > th dose dependent rect. 19 2
120 551.49 temperature 10 4320 > th dose dependent sin 20 NA
140 551.88 temperature 10 4320 > th dose dependent rect. 9 16
166 552.29 wind 9 43200 > th dose dependent rect. 17 14
304 554.19 temperature 30 4320 < th dose dependent rect. 9 13
307 554.26 temperature 30 4320 < th dose dependent sin 19 NA
328 554.52 temperature 30 4320 < th dose dependent rect. 9 16
436 555.56 wind 9 43200 < th dose independent rect. 19 2
485 555.92 temperature 15 4320 > th dose dependent rect. 24 20
533 556.30 radiation 1 14400 > th dose independent rect. 17 12
624 556.89 wind 9 43200 > th dose independent rect. 19 2
694 557.38 temperature 15 4320 > th dose dependent no NA NA
744 557.75 temperature 15 4320 > th dose dependent rect. 13 23
817 558.28 temperature 15 4320 > th dose dependent rect. 17 23
832 558.42 radiation 1 14400 > th dose independent rect. 17 2
903 558.88 temperature 10 4320 > th dose dependent rect. 11 1