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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0141100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.44 (0.0391) R2 : 0.672
β1 : -4.38 (0.147) R2dD : 0.701 R2D : 0.463
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.3 (0.137) R2dE : 0.0693 R2E : -0.0748
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.06 (0.0842) R2dN8 : 0.156 R2N8 : -0.00717
σ : 0.731
deviance : 246.22
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.9
memory length : 900
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
235.9 0.722 5.51 -4.84 0.592 1.21 -0.62 -1.8 -1.15 18.5 25.3 1231 -- --
236.92 0.717 5.46 -4.37 0.588 1.08 -0.705 -- -1.08 18.3 25 1146 -- --
236.83 0.717 5.51 -4.82 0.586 1.21 -- -1.79 -1.15 18.6 25.3 1224 -- --
237.85 0.718 5.45 -4.37 0.601 1.01 -- -- -1.04 18.7 25.3 1245 -- --
244.45 0.728 5.51 -4.83 -- 1.45 -- -2.06 -1.23 -- 23.63 858 -- --
275.41 0.778 5.43 -4.06 0.595 -- -0.424 -- -0.941 19.7 -- -- -- --
275.86 0.778 5.43 -4.05 0.594 -- -- -- -0.942 19.8 -- -- -- --
246.22 0.731 5.44 -4.38 -- 1.3 -- -- -1.06 -- 24.9 900 -- --
451.04 0.989 5.16 -- 0.615 -2.59 -- -- 0.282 20 7.571 47520 -- --
294.98 0.803 5.42 -4.06 -- -- -- -- -0.95 -- -- -- -- --
709.18 1.25 5.33 -- 0.627 -- -- -- -0.491 19.4 -- -- -- --
471.66 1.01 5.14 -- -- -2.58 -- -- 0.274 -- 7.296 47520 -- --
730.13 1.26 5.32 -- -- -- -- -- -0.5 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 234.08 wind 9 43200 > th dose independent rect. 19 3
3 234.36 wind 5 43200 > th dose dependent rect. 19 2
4 234.59 humidity 60 1440 > th dose dependent rect. 11 10
5 234.63 temperature 25 1440 > th dose dependent rect. 13 3
6 234.66 wind 9 43200 > th dose dependent rect. 19 4
7 234.67 humidity 80 1440 > th dose independent rect. 11 11
8 234.67 humidity 50 1440 > th dose dependent rect. 13 8
10 234.75 wind 9 43200 < th dose independent rect. 19 3
11 234.75 temperature 25 1440 > th dose dependent rect. 13 1
14 234.80 temperature 25 720 > th dose dependent rect. 17 7
21 235.03 temperature 25 1440 > th dose dependent rect. 15 1
24 235.07 radiation 10 1440 < th dose dependent rect. 10 8
26 235.13 radiation 10 1440 < th dose dependent rect. 13 5
31 235.20 radiation 10 1440 < th dose dependent sin 17 NA
40 235.24 temperature 25 1440 > th dose dependent rect. 13 11
46 235.33 radiation 10 1440 < th dose dependent rect. 10 13
47 235.33 radiation 10 1440 < th dose dependent rect. 10 15
48 235.34 humidity 90 1440 < th dose dependent rect. 13 8
53 235.36 radiation 10 1440 < th dose dependent rect. 10 17
64 235.41 wind 9 43200 > th dose independent rect. 19 6
67 235.42 radiation 10 1440 < th dose dependent rect. 13 9
90 235.46 temperature 25 720 > th dose dependent rect. 17 16
120 235.62 humidity 80 1440 < th dose independent rect. 11 10
132 235.75 wind 9 43200 > th dose dependent rect. 19 6
149 235.86 wind 9 43200 > th dose independent rect. 17 4
177 236.00 wind 9 43200 < th dose independent rect. 17 4
211 236.13 wind 9 43200 < th dose independent rect. 19 6
241 236.29 temperature 25 1440 > th dose dependent sin 18 NA
262 236.37 temperature 25 720 > th dose dependent sin 12 NA
310 236.67 humidity 70 1440 > th dose dependent rect. 11 4
314 236.68 radiation 10 1440 > th dose independent rect. 11 20
336 236.77 wind 9 43200 > th dose independent rect. 17 8
353 236.87 temperature 25 720 > th dose dependent rect. 21 2
377 236.98 humidity 80 1440 > th dose independent sin 21 NA
408 237.09 radiation 10 1440 > th dose independent rect. 11 7
426 237.12 humidity 50 1440 > th dose dependent sin 18 NA
427 237.12 atmosphere 1000 43200 < th dose dependent rect. 4 4
440 237.18 humidity 80 1440 > th dose independent rect. 11 4
443 237.18 atmosphere 1000 43200 < th dose dependent rect. 2 7
465 237.26 radiation 10 1440 > th dose independent sin 18 NA
503 237.42 atmosphere 1000 43200 < th dose dependent rect. 5 2
506 237.43 humidity 70 720 > th dose dependent rect. 19 2
513 237.46 humidity 70 14400 < th dose independent rect. 19 12
527 237.50 humidity 80 1440 < th dose independent rect. 11 4
528 237.50 wind 9 43200 < th dose independent rect. 18 11
547 237.56 humidity 90 1440 < th dose dependent sin 18 NA
568 237.62 radiation 10 1440 > th dose independent rect. 8 22
574 237.64 radiation 10 1440 > th dose independent rect. 8 10
593 237.67 humidity 70 14400 < th dose independent rect. 19 1
654 237.81 wind 9 43200 > th dose dependent rect. 17 12
657 237.82 humidity 70 1440 > th dose independent sin 15 NA
721 237.92 atmosphere 1000 43200 < th dose dependent sin 8 NA
750 237.98 humidity 80 1440 < th dose independent sin 21 NA
784 238.05 humidity 70 14400 > th dose independent rect. 19 12
802 238.08 temperature 25 1440 > th dose dependent rect. 20 23
814 238.11 temperature 25 1440 > th dose dependent no NA NA
907 238.29 temperature 30 14400 > th dose independent rect. 18 1