Os05g0140000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0140000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.62 | 0.518 | 3.73 | -0.869 | 0.898 | -0.508 | -1.54 | -2.64 | -0.0791 | 3.77 | 58.44 | 2810 | -- | -- |
| 130.99 | 0.533 | 3.75 | -0.873 | 0.923 | -0.644 | -1.41 | -- | -0.0197 | 3.79 | 57.48 | 2652 | -- | -- |
| 127.73 | 0.526 | 3.74 | -0.843 | 0.908 | -0.468 | -- | -2.51 | -0.104 | 4.05 | 58.74 | 2966 | -- | -- |
| 136.43 | 0.544 | 3.76 | -0.897 | 0.904 | -0.697 | -- | -- | -0.0453 | 4.33 | 56.71 | 2502 | -- | -- |
| 172.18 | 0.611 | 3.72 | -0.855 | -- | -0.578 | -- | -2.89 | -0.0425 | -- | 58.99 | 2808 | -- | -- |
| 140.43 | 0.556 | 3.79 | -0.8 | 0.948 | -- | -1.45 | -- | -0.191 | 3.71 | -- | -- | -- | -- |
| 146.26 | 0.566 | 3.79 | -0.777 | 0.952 | -- | -- | -- | -0.183 | 4.07 | -- | -- | -- | -- |
| 179.97 | 0.625 | 3.76 | -0.937 | -- | -0.763 | -- | -- | -0.00689 | -- | 53.45 | 2703 | -- | -- |
| 156.85 | 0.583 | 3.74 | -- | 0.906 | -0.507 | -- | -- | 0.0159 | 4.28 | 57.79 | 2496 | -- | -- |
| 195.63 | 0.654 | 3.79 | -0.739 | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
| 162.18 | 0.596 | 3.77 | -- | 0.937 | -- | -- | -- | -0.0967 | 4.08 | -- | -- | -- | -- |
| 197.7 | 0.655 | 3.73 | -- | -- | -0.825 | -- | -- | 0.101 | -- | 65.78 | 3990 | -- | -- |
| 210.01 | 0.676 | 3.77 | -- | -- | -- | -- | -- | -0.0759 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.63 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 2 | 120.64 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 15 | 121.09 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 18 | 14 |
| 16 | 121.20 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 19 | 121.62 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 34 | 121.80 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 17 | 10 |
| 38 | 121.81 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 51 | 121.90 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 16 | 16 |
| 58 | 122.05 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 16 | 4 |
| 72 | 122.29 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 21 | 10 |
| 74 | 122.38 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 17 | 12 |
| 81 | 122.85 | humidity | 70.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 86 | 122.96 | humidity | 60.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 103 | 123.09 | humidity | 60.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 111 | 123.24 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 14 | 19 |
| 119 | 123.39 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 121 | 123.40 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 14 | 13 |
| 122 | 123.40 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 14 | 15 |
| 134 | 123.41 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 14 | 11 |
| 142 | 123.42 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 14 | 9 |
| 158 | 123.45 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 21 |
| 164 | 123.53 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 21 |
| 165 | 123.54 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 168 | 123.59 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 7 |
| 171 | 123.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 172 | 123.63 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 14 | 5 |
| 305 | 123.87 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 20 |
| 405 | 124.29 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 408 | 124.30 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 409 | 124.30 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 15 |
| 416 | 124.32 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 435 | 124.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 13 |
| 445 | 124.38 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 446 | 124.38 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 450 | 124.40 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 478 | 124.49 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 3 |
| 493 | 124.49 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 16 | 23 |
| 498 | 124.53 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 16 | 23 |
| 500 | 124.54 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 507 | 124.55 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 8 | 11 |
| 510 | 124.55 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 2 | 17 |
| 521 | 124.56 | humidity | 60.0 | 4320 | > th | dose independent | no | NA | NA |
| 525 | 124.56 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 8 | 17 |
| 541 | 124.56 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 2 | 23 |
| 548 | 124.56 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 24 | 23 |
| 549 | 124.56 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 18 | NA |
| 659 | 124.68 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 8 | 11 |
| 674 | 124.69 | humidity | 60.0 | 4320 | < th | dose independent | no | NA | NA |
| 757 | 124.70 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 14 | 23 |
| 781 | 124.73 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 793 | 124.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 798 | 124.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 842 | 124.84 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 848 | 124.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 14 |
| 856 | 124.87 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 884 | 124.92 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 961 | 125.02 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 17 | 13 |