Os05g0138200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chitinase (Class II) (EC 3.2.1.14).
FiT-DB / Search/ Help/ Sample detail
|
Os05g0138200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Chitinase (Class II) (EC 3.2.1.14).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.59 | 0.578 | 2.87 | -0.231 | 0.0831 | -0.0946 | 0.0338 | -0.925 | -0.00128 | 23.9 | 1015 | 4463 | -- | -- |
| 153.6 | 0.577 | 2.86 | 0.0157 | 0.0873 | -0.235 | 0.0458 | -- | 0.0586 | 23.7 | 1014 | 6590 | -- | -- |
| 151.59 | 0.573 | 2.87 | -0.231 | 0.0828 | -0.0949 | -- | -0.925 | -0.00112 | 24 | 1015 | 4462 | -- | -- |
| 153.61 | 0.577 | 2.86 | 0.0214 | 0.0859 | -0.231 | -- | -- | 0.0606 | 0.0362 | 1014 | 6579 | -- | -- |
| 152.02 | 0.574 | 2.87 | -0.229 | -- | -0.0967 | -- | -0.929 | -0.000868 | -- | 1015 | 4462 | -- | -- |
| 155.91 | 0.585 | 2.87 | -0.0583 | 0.0864 | -- | 0.0633 | -- | 0.0154 | 23.5 | -- | -- | -- | -- |
| 155.93 | 0.585 | 2.87 | -0.0611 | 0.0864 | -- | -- | -- | 0.015 | 23.9 | -- | -- | -- | -- |
| 154.07 | 0.578 | 2.86 | 0.0183 | -- | -0.234 | -- | -- | 0.0684 | -- | 1014 | 6576 | -- | -- |
| 153.61 | 0.577 | 2.86 | -- | 0.0862 | -0.231 | -- | -- | 0.0639 | 0.116 | 1014 | 6576 | -- | -- |
| 156.4 | 0.584 | 2.87 | -0.0585 | -- | -- | -- | -- | 0.0161 | -- | -- | -- | -- | -- |
| 156.03 | 0.584 | 2.87 | -- | 0.0856 | -- | -- | -- | 0.0218 | 23.9 | -- | -- | -- | -- |
| 154.07 | 0.578 | 2.86 | -- | -- | -0.23 | -- | -- | 0.0657 | -- | 1014 | 6576 | -- | -- |
| 156.49 | 0.584 | 2.87 | -- | -- | -- | -- | -- | 0.0226 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.95 | wind | 1.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 2 | 140.75 | humidity | 80.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 7 | 140.75 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 29 | 142.55 | wind | 1.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 30 | 142.70 | wind | 3.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 31 | 142.74 | wind | 1.0 | 30 | < th | dose dependent | rect. | 15 | 9 |
| 39 | 144.14 | wind | 3.0 | 10 | > th | dose independent | rect. | 5 | 2 |
| 40 | 144.42 | wind | 1.0 | 270 | < th | dose dependent | rect. | 14 | 13 |
| 42 | 144.44 | wind | 1.0 | 30 | < th | dose dependent | rect. | 15 | 7 |
| 44 | 144.51 | wind | 3.0 | 10 | > th | dose dependent | rect. | 4 | 3 |
| 48 | 144.58 | wind | 1.0 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 79 | 145.49 | wind | 1.0 | 90 | < th | dose dependent | rect. | 21 | 1 |
| 83 | 145.55 | wind | 1.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 87 | 145.55 | wind | 1.0 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 97 | 145.56 | wind | 1.0 | 270 | < th | dose dependent | rect. | 14 | 10 |
| 98 | 145.57 | wind | 1.0 | 270 | < th | dose dependent | rect. | 22 | 5 |
| 100 | 145.61 | wind | 1.0 | 270 | < th | dose dependent | sin | 18 | NA |
| 107 | 145.70 | wind | 1.0 | 270 | < th | dose dependent | rect. | 15 | 7 |
| 111 | 145.73 | wind | 1.0 | 30 | < th | dose independent | rect. | 15 | 7 |
| 116 | 145.75 | wind | 1.0 | 90 | < th | dose independent | rect. | 21 | 1 |
| 117 | 145.76 | wind | 1.0 | 270 | < th | dose independent | rect. | 15 | 8 |
| 155 | 145.99 | wind | 1.0 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 159 | 146.02 | wind | 1.0 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 185 | 146.57 | humidity | 50.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 277 | 146.57 | wind | 1.0 | 30 | < th | dose dependent | rect. | 23 | 1 |
| 278 | 146.57 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 375 | 146.75 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 378 | 146.77 | wind | 7.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 392 | 147.20 | wind | 1.0 | 270 | < th | dose dependent | rect. | 12 | 12 |
| 393 | 147.20 | wind | 1.0 | 30 | < th | dose dependent | rect. | 10 | 14 |
| 408 | 147.45 | wind | 1.0 | 270 | < th | dose independent | rect. | 14 | 13 |
| 409 | 147.45 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 416 | 147.58 | wind | 1.0 | 270 | < th | dose independent | rect. | 12 | 15 |
| 417 | 147.58 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 427 | 147.78 | wind | 1.0 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 432 | 147.85 | wind | 1.0 | 270 | < th | dose independent | rect. | 15 | 1 |
| 438 | 147.88 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 446 | 147.93 | temperature | 25.0 | 90 | < th | dose independent | rect. | 20 | 1 |
| 449 | 147.94 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 452 | 147.95 | wind | 1.0 | 270 | < th | dose dependent | rect. | 15 | 1 |
| 466 | 148.16 | wind | 7.0 | 4320 | > th | dose independent | rect. | 21 | 5 |
| 469 | 148.19 | wind | 1.0 | 270 | < th | dose independent | rect. | 22 | 5 |
| 491 | 148.40 | wind | 7.0 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 494 | 148.44 | temperature | 25.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 506 | 148.52 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 515 | 148.62 | wind | 7.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 528 | 148.70 | wind | 1.0 | 270 | < th | dose independent | sin | 18 | NA |
| 544 | 148.80 | temperature | 25.0 | 90 | < th | dose independent | rect. | 20 | 3 |
| 572 | 149.00 | wind | 1.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 628 | 149.26 | wind | 7.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 632 | 149.27 | humidity | 90.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 636 | 149.28 | wind | 1.0 | 270 | > th | dose independent | sin | 18 | NA |
| 650 | 149.33 | wind | 7.0 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 666 | 149.41 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 2 |
| 669 | 149.41 | wind | 7.0 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 675 | 149.45 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 2 |
| 741 | 149.72 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 24 | 10 |
| 754 | 149.78 | wind | 5.0 | 4320 | > th | dose independent | rect. | 19 | 18 |
| 755 | 149.78 | wind | 5.0 | 4320 | < th | dose independent | rect. | 19 | 18 |
| 756 | 149.78 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 2 |
| 803 | 149.88 | wind | 1.0 | 30 | < th | dose dependent | rect. | 8 | 16 |
| 813 | 149.90 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 24 | 3 |
| 820 | 149.93 | wind | 3.0 | 10 | < th | dose dependent | rect. | 15 | 2 |
| 862 | 150.02 | wind | 9.0 | 90 | < th | dose dependent | rect. | 14 | 14 |
| 870 | 150.04 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 15 | 6 |
| 878 | 150.05 | wind | 7.0 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 933 | 150.16 | temperature | 20.0 | 30 | > th | dose independent | rect. | 21 | 1 |
| 983 | 150.29 | wind | 7.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 987 | 150.30 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 988 | 150.30 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 1 |