Os05g0137800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os05g0137800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.03 | 0.305 | 8.43 | -1.01 | 1.65 | 0.308 | -0.0655 | 1.28 | -0.104 | 1.34 | 1013 | 10368 | -- | -- |
| 49.32 | 0.327 | 8.5 | -1.35 | 1.7 | 0.313 | 0.0847 | -- | -0.183 | 1.23 | 1014 | 11472 | -- | -- |
| 42.01 | 0.302 | 8.43 | -0.99 | 1.65 | 0.288 | -- | 1.27 | -0.0959 | 1.34 | 1013 | 11823 | -- | -- |
| 47.68 | 0.322 | 8.46 | -1.49 | 1.65 | 0.41 | -- | -- | -0.181 | 1.27 | 1015 | 24081 | -- | -- |
| 207.29 | 0.671 | 8.39 | -0.804 | -- | 0.364 | -- | 1.7 | -0.0374 | -- | 1013 | 9812 | -- | -- |
| 52.88 | 0.341 | 8.47 | -1.33 | 1.66 | -- | -0.0819 | -- | -0.129 | 1.36 | -- | -- | -- | -- |
| 52.9 | 0.341 | 8.47 | -1.33 | 1.66 | -- | -- | -- | -0.129 | 1.36 | -- | -- | -- | -- |
| 196.94 | 0.654 | 8.44 | -1.46 | -- | 0.665 | -- | -- | -0.0817 | -- | 1009 | 620 | -- | -- |
| 82.82 | 0.424 | 8.4 | -- | 1.65 | -0.658 | -- | -- | 0.187 | 1.35 | 1013 | 47520 | -- | -- |
| 221.98 | 0.696 | 8.44 | -1.26 | -- | -- | -- | -- | -0.0939 | -- | -- | -- | -- | -- |
| 99.52 | 0.467 | 8.44 | -- | 1.63 | -- | -- | -- | 0.0195 | 1.33 | -- | -- | -- | -- |
| 244.3 | 0.728 | 8.37 | -- | -- | 0.664 | -- | -- | 0.242 | -- | 1009 | 767 | -- | -- |
| 264.18 | 0.759 | 8.41 | -- | -- | -- | -- | -- | 0.0464 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.54 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 2 | 41.55 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 21 | 41.90 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 42 | 42.02 | humidity | 50 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 59 | 42.06 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 97 | 42.17 | humidity | 50 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 98 | 42.17 | humidity | 50 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 99 | 42.17 | humidity | 50 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 175 | 42.28 | atmosphere | 1015 | 14400 | < th | dose independent | sin | 13 | NA |
| 215 | 42.30 | humidity | 50 | 14400 | > th | dose independent | rect. | 3 | 12 |
| 223 | 42.30 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 241 | 42.31 | atmosphere | 1015 | 14400 | > th | dose independent | sin | 13 | NA |
| 288 | 42.34 | humidity | 50 | 14400 | < th | dose dependent | sin | 7 | NA |
| 471 | 42.47 | humidity | 70 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 548 | 42.51 | humidity | 50 | 14400 | > th | dose independent | sin | 7 | NA |
| 687 | 42.55 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 12 | 12 |
| 721 | 42.57 | humidity | 50 | 14400 | < th | dose independent | sin | 7 | NA |
| 724 | 42.57 | atmosphere | 1015 | 14400 | < th | dose independent | no | NA | NA |
| 793 | 42.60 | atmosphere | 1015 | 14400 | > th | dose independent | no | NA | NA |
| 890 | 42.64 | humidity | 70 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 966 | 42.69 | humidity | 70 | 14400 | > th | dose independent | rect. | 7 | 1 |