Os05g0137300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin fold domain containing protein.
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Os05g0137300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.15 | 0.231 | 15.1 | 0.217 | 0.636 | -0.692 | 0.506 | 2.28 | 0.161 | 3.42 | 22.34 | 486 | -- | -- |
| 26.07 | 0.24 | 15.1 | -0.231 | 0.65 | -0.568 | -0.296 | -- | 0.0386 | 5.05 | 22.34 | 486 | -- | -- |
| 24.79 | 0.232 | 15.1 | 0.162 | 0.665 | -0.658 | -- | 1.98 | 0.14 | 3.57 | 22.3 | 526 | -- | -- |
| 25.89 | 0.237 | 15.1 | -0.19 | 0.848 | -0.402 | -- | -- | 0.0479 | 4.23 | 21.17 | 1607 | -- | -- |
| 36.87 | 0.283 | 15.1 | 0.219 | -- | -1.21 | -- | 2.48 | 0.185 | -- | 23.86 | 242 | -- | -- |
| 30.87 | 0.26 | 15.1 | -0.344 | 0.838 | -- | 0.0989 | -- | -0.0503 | 4.32 | -- | -- | -- | -- |
| 30.9 | 0.26 | 15.1 | -0.345 | 0.839 | -- | -- | -- | -0.0509 | 4.35 | -- | -- | -- | -- |
| 39.31 | 0.292 | 15.1 | -0.126 | -- | -1.04 | -- | -- | 0.0979 | -- | 23.3 | 162 | -- | -- |
| 26.62 | 0.24 | 15.1 | -- | 0.816 | -0.51 | -- | -- | 0.0798 | 4.2 | 18.99 | 1651 | -- | -- |
| 68.73 | 0.387 | 15.2 | -0.312 | -- | -- | -- | -- | -0.0286 | -- | -- | -- | -- | -- |
| 34.03 | 0.273 | 15.1 | -- | 0.832 | -- | -- | -- | -0.0124 | 4.35 | -- | -- | -- | -- |
| 39.7 | 0.293 | 15.1 | -- | -- | -1.07 | -- | -- | 0.121 | -- | 23.16 | 162 | -- | -- |
| 71.29 | 0.394 | 15.1 | -- | -- | -- | -- | -- | 0.00595 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.69 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 33 | 22.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 50 | 22.92 | temperature | 25 | 270 | > th | dose independent | sin | 21 | NA |
| 72 | 23.18 | temperature | 10 | 270 | > th | dose dependent | sin | 22 | NA |
| 94 | 23.31 | temperature | 20 | 270 | > th | dose dependent | sin | 20 | NA |
| 95 | 23.31 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 98 | 23.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 10 |
| 114 | 23.40 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 13 |
| 151 | 23.56 | radiation | 40 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 159 | 23.59 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 5 |
| 163 | 23.59 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 170 | 23.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 12 |
| 201 | 23.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 6 |
| 206 | 23.72 | temperature | 25 | 270 | < th | dose independent | sin | 23 | NA |
| 207 | 23.72 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 14 |
| 230 | 23.77 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 3 |
| 232 | 23.77 | temperature | 20 | 720 | > th | dose dependent | sin | 2 | NA |
| 235 | 23.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 239 | 23.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 10 |
| 264 | 23.86 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 10 |
| 278 | 23.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 305 | 23.92 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 311 | 23.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 315 | 23.94 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 5 |
| 330 | 23.95 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 380 | 24.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 399 | 24.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 12 |
| 669 | 24.39 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 8 |
| 688 | 24.41 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 737 | 24.47 | temperature | 25 | 720 | < th | dose independent | sin | 4 | NA |
| 760 | 24.49 | radiation | 20 | 270 | < th | dose dependent | sin | 14 | NA |
| 766 | 24.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 781 | 24.51 | temperature | 25 | 720 | > th | dose independent | sin | 1 | NA |
| 892 | 24.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 947 | 24.67 | radiation | 1 | 270 | < th | dose independent | sin | 14 | NA |