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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0137200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to P-glycoprotein ABCB5.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0252) R2 : 0.906
β1 : -1.7 (0.0921) R2dD : 0.0728 R2D : 0.0557
β2 : 4.68 (0.077) R2dC : 1.07 R2C : 0.767
β3 : 0.919 (0.0592) R2dE : 0.0691 R2E : -0.22
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.251 (0.0537) R2dN8 : 0.00605 R2N8 : -0.0115
σ : 0.47
deviance : 101.94
__
_____
C
peak time of C : 6.73
E
wheather : temperature
threshold : 14.67
memory length : 35
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 6.62

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
96.67 0.462 11.6 -1.71 4.69 0.925 0.752 -0.633 -0.249 6.73 14.75 35 18.1 6.67
98.32 0.462 11.6 -1.72 4.68 0.919 1.18 -- -0.25 6.74 14.5 31 18.1 6.68
97.76 0.461 11.6 -1.7 4.69 0.929 -- -0.874 -0.247 6.73 14.82 35 18.1 6.62
101.94 0.47 11.6 -1.7 4.68 0.919 -- -- -0.251 6.73 14.67 35 18.1 6.62
189.14 0.641 11.9 -1.92 -- 4.19 -- -3.69 -0.723 -- 14.4 845 17.5 10.8
126.82 0.528 11.6 -1.69 4.13 -- 1.15 -- -0.237 6.13 -- -- -- --
130.06 0.534 11.6 -1.68 4.13 -- -- -- -0.241 6.13 -- -- -- --
129.65 0.53 11.9 -1.8 -- 4.43 -- -- -0.432 -- 14.2 841 17.6 10.9
175.82 0.618 11.6 -- 4.71 0.967 -- -- -0.0614 6.8 13.22 58 18 6.65
1015.14 1.49 11.7 -1.56 -- -- -- -- -0.149 -- -- -- -- --
204.42 0.669 11.6 -- 4.11 -- -- -- -0.0542 6.15 -- -- -- --
198.2 0.656 11.7 -- -- 4.52 -- -- -0.0884 -- 13.84 799 17.8 11.3
1079.6 1.53 11.7 -- -- -- -- -- 0.0243 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 98.05 temperature 15.0 30 > th dose independent rect. 18 7
5 99.07 humidity 50.0 270 > th dose independent rect. 3 9
6 99.41 atmosphere 1010.0 30 < th dose independent rect. 18 7
7 99.58 wind 9.0 30 < th dose independent rect. 1 17
8 99.59 precipitation 0.1 270 < th dose independent rect. 3 9
9 99.59 precipitation 0.1 270 < th dose dependent rect. 3 9
12 99.79 radiation 1.0 10 < th dose dependent rect. 18 7
13 99.91 temperature 10.0 90 > th dose dependent rect. 18 6
14 99.93 precipitation 0.1 270 < th dose independent rect. 17 5
16 99.93 precipitation 0.1 270 < th dose dependent rect. 17 5
18 99.99 precipitation 0.1 30 < th dose independent rect. 18 7
20 99.99 precipitation 0.1 30 < th dose dependent rect. 18 7
23 100.02 radiation 1.0 10 < th dose independent rect. 18 7
25 100.04 atmosphere 995.0 30 > th dose independent rect. 18 7
29 100.06 humidity 60.0 10 > th dose independent rect. 18 7
34 100.06 temperature 10.0 30 > th dose independent rect. 1 17
36 100.06 atmosphere 1015.0 30 < th dose independent rect. 1 17
37 100.09 wind 9.0 30 < th dose independent rect. 18 7
42 100.31 wind 7.0 270 < th dose independent rect. 17 5
47 100.42 temperature 10.0 270 > th dose independent rect. 3 9
48 100.42 atmosphere 995.0 270 > th dose independent rect. 3 9
49 100.42 atmosphere 1015.0 270 < th dose independent rect. 3 9
50 100.42 temperature 10.0 270 > th dose independent rect. 12 15
95 100.85 wind 1.0 270 > th dose independent rect. 17 5
113 100.96 wind 9.0 270 < th dose independent rect. 3 9
122 101.10 wind 9.0 270 < th dose independent rect. 22 19
127 101.21 wind 9.0 270 < th dose independent rect. 12 15
133 101.28 temperature 10.0 270 > th dose independent rect. 22 19
142 101.43 wind 1.0 30 > th dose independent rect. 18 7
144 101.43 atmosphere 1015.0 30 < th dose dependent rect. 18 7
159 101.49 temperature 10.0 270 > th dose dependent rect. 18 4
160 101.49 radiation 20.0 43200 < th dose dependent rect. 19 7
173 101.60 precipitation 0.1 30 < th dose independent rect. 1 17
174 101.60 precipitation 0.1 30 < th dose dependent rect. 1 17
202 101.80 radiation 1.0 1440 < th dose dependent rect. 19 7
223 101.96 wind 9.0 270 < th dose dependent rect. 17 5
231 102.02 radiation 10.0 10 < th dose dependent rect. 1 17
237 102.20 precipitation 0.1 270 < th dose independent rect. 22 19
238 102.20 precipitation 0.1 270 < th dose dependent rect. 22 19
245 102.34 precipitation 0.1 270 < th dose independent rect. 17 19
246 102.34 precipitation 0.1 270 < th dose dependent rect. 17 19
248 102.38 atmosphere 995.0 270 > th dose independent rect. 18 4
257 102.43 atmosphere 995.0 30 > th dose independent rect. 1 17
265 102.50 humidity 90.0 30 < th dose independent rect. 18 18
266 102.50 atmosphere 1015.0 270 < th dose dependent rect. 18 4
269 102.52 radiation 1.0 90 < th dose independent rect. 24 18
271 102.55 temperature 30.0 10 < th dose independent rect. 18 7
315 102.87 atmosphere 995.0 270 > th dose independent rect. 22 19
317 102.89 temperature 10.0 1440 > th dose independent rect. 19 7
320 102.89 temperature 30.0 1440 < th dose independent rect. 19 7
324 102.89 humidity 50.0 1440 > th dose independent rect. 19 7
326 102.89 atmosphere 995.0 1440 > th dose independent rect. 19 7
327 102.89 radiation 1.0 1440 < th dose independent rect. 19 7
347 102.89 temperature 10.0 1440 > th dose independent rect. 2 17
359 102.98 humidity 50.0 270 > th dose independent rect. 17 19
362 103.01 radiation 1.0 270 < th dose dependent rect. 22 18
370 103.06 radiation 1.0 270 < th dose dependent rect. 22 20
386 103.34 humidity 90.0 270 < th dose independent rect. 17 6
387 103.35 temperature 10.0 270 > th dose independent rect. 12 5
389 103.35 atmosphere 1010.0 270 < th dose independent rect. 12 5
392 103.35 temperature 10.0 270 > th dose independent rect. 17 19
398 103.39 precipitation 0.1 270 < th dose independent rect. 12 5
399 103.39 precipitation 0.1 270 < th dose dependent rect. 12 5
400 103.40 wind 9.0 270 < th dose independent rect. 12 5
406 103.46 wind 9.0 270 < th dose independent rect. 17 19
421 103.55 atmosphere 1015.0 270 < th dose dependent rect. 12 5
422 103.56 wind 1.0 270 > th dose independent rect. 12 5
462 103.59 humidity 90.0 30 < th dose independent rect. 18 21
493 103.90 atmosphere 1000.0 270 > th dose independent rect. 22 7
509 104.03 atmosphere 1015.0 270 < th dose dependent rect. 13 3
512 104.06 humidity 90.0 270 < th dose independent rect. 12 5
519 104.12 atmosphere 995.0 270 > th dose independent rect. 12 5
521 104.12 precipitation 0.1 270 < th dose independent rect. 12 15
524 104.12 precipitation 0.1 270 < th dose dependent rect. 12 15
529 104.15 humidity 90.0 270 < th dose independent rect. 18 4
534 104.17 temperature 15.0 30 > th dose independent rect. 18 18
536 104.18 atmosphere 995.0 270 > th dose independent rect. 17 19
540 104.23 atmosphere 995.0 270 > th dose independent rect. 12 15
548 104.25 wind 9.0 10 < th dose dependent rect. 18 6
563 104.34 radiation 1.0 270 < th dose independent rect. 22 18
565 104.37 temperature 30.0 270 < th dose independent rect. 18 4
587 104.50 radiation 40.0 270 < th dose independent rect. 17 18
625 104.72 radiation 1.0 270 < th dose dependent rect. 22 9
651 104.84 humidity 50.0 270 > th dose independent rect. 12 5
657 104.86 radiation 40.0 270 < th dose dependent rect. 18 16
664 104.91 wind 1.0 270 > th dose independent rect. 17 19
686 105.01 wind 1.0 10 > th dose independent rect. 18 18
697 105.06 radiation 40.0 270 < th dose dependent rect. 17 18
748 105.29 atmosphere 1000.0 270 > th dose independent rect. 23 4
774 105.48 humidity 50.0 270 > th dose dependent rect. 22 7
792 105.61 radiation 1.0 270 < th dose independent rect. 22 9
814 105.69 precipitation 0.1 270 < th dose independent rect. 7 15
816 105.69 precipitation 0.1 270 < th dose dependent rect. 7 15
818 105.70 radiation 40.0 90 < th dose independent rect. 13 5
831 105.73 wind 1.0 270 > th dose independent rect. 6 16
842 105.78 temperature 30.0 90 < th dose independent rect. 18 18
920 106.02 temperature 10.0 1440 > th dose independent rect. 13 6
924 106.02 temperature 10.0 1440 > th dose independent rect. 19 18
927 106.02 atmosphere 995.0 1440 > th dose independent rect. 19 18
939 106.05 atmosphere 1015.0 270 < th dose independent rect. 17 19
956 106.12 radiation 30.0 270 < th dose dependent rect. 22 9
966 106.18 humidity 70.0 270 > th dose dependent rect. 23 4