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Os05g0136900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0537) R2 : 0.698
β1 : 1.83 (0.28) R2dD : 0.0729 R2D : 0.125
β2 : 2.34 (0.139) R2dC : 0.262 R2C : 0.384
β3 : -1.4 (0.223) R2dE : 0.0512 R2E : 0.126
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.29 (1.27) R2dD*E : 0.0777 R2D*E : 0.206
γ1 : 0.725 (0.127) R2dN8 : 0.0444 R2N8 : 0.0126
σ : 0.9
deviance : 373.7
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C
peak time of C : 9.19
E
wheather : temperature
threshold : 22.54
memory length : 235
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.37
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
367.58 0.901 10.3 1.99 1.48 -2.21 -4.13 -10.7 0.716 8.53 16.25 280 8.7 --
404.82 0.937 10.1 3.16 2.03 -2.44 0.612 -- 1.11 9.54 23.62 328 7.17 --
373.7 0.9 10.2 1.83 2.34 -1.4 -- -8.29 0.725 9.19 22.54 235 6.37 --
407.17 0.94 10.1 3.22 2.09 -2.37 -- -- 1.09 9.55 23.65 320 7.21 --
432.35 0.968 10.2 2.93 -- -3.51 -- -3.45 0.941 -- 8.666 121 8.55 --
488.39 1.04 10.1 2.84 2.94 -- 1.45 -- 0.804 9.46 -- -- -- --
496 1.04 10.1 2.89 2.94 -- -- -- 0.805 9.4 -- -- -- --
436.05 0.973 10.1 3.32 -- -3.81 -- -- 1.05 -- 6.825 369 10.9 --
667.63 1.2 10.2 -- 2.39 -1.91 -- -- 0.553 9.71 25.47 360 6.7 --
1000.8 1.48 10.2 2.87 -- -- -- -- 0.815 -- -- -- -- --
716.17 1.25 10.2 -- 2.93 -- -- -- 0.483 9.33 -- -- -- --
702.39 1.23 10.3 -- -- -3.31 -- -- 0.579 -- -11.54 345 11.2 --
1218.59 1.63 10.3 -- -- -- -- -- 0.497 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 365.23 temperature 15.0 270 > th dose dependent rect. 15 11
3 367.72 temperature 20.0 270 > th dose dependent rect. 15 17
4 368.33 temperature 15.0 270 > th dose dependent sin 15 NA
18 374.02 temperature 20.0 270 > th dose dependent sin 13 NA
31 376.67 temperature 10.0 720 > th dose dependent rect. 8 18
46 378.07 temperature 20.0 720 > th dose dependent rect. 15 4
50 378.61 temperature 25.0 720 > th dose dependent rect. 16 1
59 379.58 wind 9.0 43200 > th dose dependent rect. 17 13
76 381.28 temperature 20.0 4320 > th dose dependent rect. 17 3
77 381.30 temperature 20.0 4320 > th dose dependent rect. 17 1
90 382.02 temperature 10.0 4320 > th dose dependent rect. 17 2
91 382.03 temperature 15.0 720 > th dose dependent sin 19 NA
113 382.77 temperature 30.0 4320 < th dose dependent rect. 18 1
147 383.68 wind 9.0 43200 > th dose independent rect. 17 13
157 383.99 precipitation 0.1 43200 > th dose dependent rect. 20 1
169 384.26 wind 9.0 43200 < th dose independent rect. 17 13
233 385.91 wind 9.0 43200 > th dose dependent rect. 20 10
249 386.23 temperature 25.0 4320 > th dose dependent rect. 17 12
293 387.03 wind 9.0 43200 > th dose independent rect. 20 10
306 387.17 temperature 30.0 720 < th dose independent rect. 2 20
317 387.33 temperature 30.0 720 > th dose independent rect. 16 1
431 388.75 wind 9.0 43200 < th dose independent rect. 20 9
438 388.80 wind 9.0 43200 < th dose independent rect. 17 5
448 388.95 precipitation 0.1 43200 < th dose independent rect. 20 1
450 388.95 precipitation 0.1 43200 < th dose dependent rect. 20 1
464 389.14 temperature 25.0 4320 > th dose dependent sin 12 NA
474 389.28 radiation 20.0 720 > th dose independent rect. 16 1
502 389.40 temperature 30.0 4320 > th dose independent rect. 14 4
505 389.44 wind 9.0 43200 > th dose dependent rect. 17 6
511 389.49 temperature 30.0 4320 < th dose independent rect. 14 4
528 389.67 precipitation 0.1 43200 > th dose independent rect. 20 1
537 389.73 temperature 25.0 4320 < th dose independent rect. 22 2
540 389.76 wind 9.0 43200 > th dose dependent rect. 17 9
548 389.90 wind 7.0 43200 > th dose independent rect. 19 3
561 390.06 temperature 25.0 4320 < th dose independent rect. 19 13
567 390.08 temperature 30.0 4320 > th dose dependent rect. 14 3
589 390.21 temperature 30.0 4320 > th dose dependent rect. 14 1
597 390.25 temperature 30.0 4320 < th dose independent rect. 16 1
608 390.32 temperature 30.0 4320 < th dose independent rect. 14 10
610 390.33 temperature 25.0 4320 < th dose independent rect. 19 6
613 390.34 temperature 30.0 4320 < th dose independent rect. 14 16
642 390.48 temperature 25.0 4320 < th dose independent rect. 17 15
652 390.51 temperature 25.0 4320 > th dose independent rect. 19 13
654 390.52 wind 7.0 43200 > th dose dependent rect. 19 4
687 390.80 temperature 25.0 4320 > th dose independent rect. 17 14
693 390.84 temperature 25.0 4320 > th dose independent rect. 22 2
698 390.88 temperature 25.0 4320 > th dose independent rect. 20 4
751 391.08 wind 9.0 43200 > th dose independent rect. 17 6
759 391.14 temperature 25.0 4320 > th dose independent rect. 19 10
767 391.22 wind 7.0 43200 < th dose independent rect. 19 3
818 391.43 wind 9.0 43200 > th dose dependent rect. 14 16
846 391.56 temperature 25.0 4320 < th dose independent rect. 19 10
865 391.69 humidity 50.0 14400 > th dose independent rect. 17 16
869 391.71 temperature 25.0 4320 > th dose dependent rect. 3 4
938 392.16 temperature 25.0 4320 > th dose dependent rect. 2 6
949 392.24 humidity 50.0 14400 < th dose independent rect. 16 17
978 392.37 temperature 25.0 4320 < th dose independent sin 12 NA