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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0136800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.025) R2 : 0.0156
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.141 (0.0525) R2dN8 : 0.0201 R2N8 : 0.0156
σ : 0.47
deviance : 101.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.15 0.456 3.21 0.308 0.261 -0.225 0.0109 -1.19 0.124 6.82 55.5 5936 -- --
95.96 0.456 3.2 0.215 0.254 -0.238 0.00326 -- 0.0834 7.03 66.09 8395 -- --
94.11 0.452 3.21 0.347 0.262 -0.195 -- -1.15 0.12 6.8 66.02 5929 -- --
95.96 0.456 3.21 0.213 0.257 -0.241 -- -- 0.0827 6.97 67 8395 -- --
97.62 0.46 3.22 0.345 -- -0.208 -- -1.14 0.124 -- 64.12 5793 -- --
97.03 0.462 3.19 0.179 0.258 -- -0.0202 -- 0.157 6.77 -- -- -- --
97.03 0.461 3.19 0.179 0.258 -- -- -- 0.157 6.79 -- -- -- --
99.46 0.464 3.21 0.221 -- -0.24 -- -- 0.085 -- 66.01 8460 -- --
97.12 0.459 3.21 -- 0.263 -0.199 -- -- 0.0707 6.9 67.95 8395 -- --
100.5 0.468 3.19 0.185 -- -- -- -- 0.162 -- -- -- -- --
97.87 0.463 3.19 -- 0.26 -- -- -- 0.137 6.74 -- -- -- --
100.68 0.467 3.21 -- -- -0.195 -- -- 0.0727 -- 68 8460 -- --
101.4 0.47 3.2 -- -- -- -- -- 0.141 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.46 wind 9.0 4320 < th dose independent rect. 3 1
2 89.90 radiation 10.0 43200 < th dose dependent rect. 3 1
5 89.91 temperature 10.0 1440 > th dose independent rect. 3 1
8 89.91 temperature 30.0 1440 < th dose independent rect. 3 1
12 89.91 humidity 50.0 1440 > th dose independent rect. 3 1
21 89.91 atmosphere 995.0 1440 > th dose independent rect. 3 1
22 89.91 radiation 1.0 1440 < th dose independent rect. 3 1
42 89.91 temperature 10.0 1440 > th dose independent rect. 4 23
45 89.91 radiation 1.0 1440 < th dose dependent rect. 3 1
63 90.73 atmosphere 1005.0 10 > th dose dependent rect. 2 3
65 91.12 atmosphere 1005.0 90 > th dose dependent rect. 2 1
66 91.14 atmosphere 1000.0 90 > th dose independent rect. 3 23
67 91.22 temperature 25.0 90 > th dose dependent rect. 2 2
69 91.30 temperature 25.0 90 > th dose independent rect. 1 3
73 91.44 atmosphere 1015.0 1440 < th dose independent rect. 3 1
74 91.47 atmosphere 1005.0 90 > th dose independent rect. 2 1
80 91.75 wind 3.0 90 < th dose independent rect. 2 1
82 91.87 temperature 25.0 270 > th dose independent rect. 1 1
85 91.93 wind 5.0 90 < th dose dependent rect. 2 1
113 92.12 temperature 10.0 30 > th dose independent rect. 2 1
115 92.12 temperature 30.0 30 < th dose independent rect. 2 1
116 92.12 humidity 50.0 30 > th dose independent rect. 2 1
119 92.12 humidity 90.0 30 > th dose independent rect. 2 1
121 92.12 atmosphere 1010.0 30 < th dose independent rect. 2 1
123 92.12 radiation 1.0 30 < th dose independent rect. 2 1
128 92.12 precipitation 0.1 30 < th dose independent rect. 2 1
129 92.12 temperature 10.0 30 > th dose independent rect. 3 23
130 92.12 humidity 50.0 30 > th dose dependent rect. 2 1
133 92.12 radiation 1.0 30 < th dose dependent rect. 2 1
138 92.12 precipitation 0.1 30 < th dose dependent rect. 2 1
149 92.19 atmosphere 1015.0 30 < th dose dependent rect. 2 1
151 92.20 wind 1.0 30 > th dose independent rect. 2 1
155 92.23 temperature 30.0 30 < th dose dependent rect. 2 1
168 92.34 precipitation 0.1 30 < th dose independent rect. 3 23
169 92.34 precipitation 0.1 30 < th dose dependent rect. 3 23
253 92.67 wind 9.0 30 < th dose independent rect. 3 23
264 92.89 humidity 50.0 30 > th dose independent rect. 3 23
313 93.55 temperature 25.0 30 > th dose independent rect. 4 1
319 93.58 atmosphere 1000.0 90 < th dose dependent rect. 6 3
325 93.61 atmosphere 1000.0 90 < th dose independent rect. 6 1
326 93.61 atmosphere 1000.0 10 < th dose independent rect. 7 1
336 93.61 atmosphere 1000.0 90 < th dose dependent rect. 6 1
337 93.61 atmosphere 1000.0 10 < th dose dependent rect. 7 1
356 93.67 humidity 90.0 90 < th dose independent rect. 2 1
388 93.85 radiation 1.0 10 < th dose dependent rect. 2 14
392 93.86 humidity 80.0 14400 < th dose dependent rect. 20 14
393 93.87 temperature 25.0 90 > th dose dependent rect. 4 1
395 93.87 humidity 80.0 14400 < th dose dependent rect. 23 11
399 93.88 atmosphere 1000.0 10 > th dose independent rect. 16 10
435 93.92 humidity 50.0 30 > th dose independent rect. 5 21
444 93.94 humidity 70.0 14400 > th dose independent rect. 8 2
448 93.95 radiation 1.0 10 < th dose dependent rect. 2 12
452 93.96 humidity 70.0 14400 > th dose independent rect. 4 6
454 93.96 radiation 1.0 90 < th dose dependent rect. 1 23
494 93.98 temperature 25.0 720 > th dose dependent rect. 3 5
498 93.99 humidity 70.0 14400 < th dose independent rect. 8 2
501 94.00 humidity 90.0 90 < th dose independent rect. 2 3
541 94.04 radiation 1.0 10 < th dose independent rect. 2 14
547 94.06 humidity 80.0 14400 < th dose dependent sin 8 NA
566 94.09 radiation 1.0 10 < th dose independent rect. 2 12
575 94.11 humidity 80.0 4320 < th dose dependent rect. 1 1
612 94.15 atmosphere 1000.0 10 > th dose independent rect. 14 12
617 94.15 atmosphere 995.0 10 > th dose dependent rect. 5 21
628 94.17 radiation 10.0 10 < th dose independent rect. 16 10
647 94.19 humidity 50.0 10 > th dose independent rect. 2 14
672 94.23 humidity 90.0 10 < th dose independent rect. 4 1
713 94.23 humidity 50.0 10 > th dose independent rect. 16 10
728 94.24 radiation 1.0 10 < th dose independent rect. 2 10
745 94.25 atmosphere 995.0 1440 > th dose independent rect. 3 12
771 94.27 precipitation 0.1 10 < th dose independent rect. 2 14
781 94.27 precipitation 0.1 10 < th dose dependent rect. 2 14
809 94.28 radiation 10.0 10 < th dose independent rect. 14 12
810 94.28 temperature 10.0 1440 > th dose independent rect. 6 21
819 94.28 radiation 1.0 10 < th dose dependent rect. 1 23
820 94.29 wind 9.0 10 < th dose independent rect. 16 10
829 94.31 atmosphere 1000.0 10 > th dose independent rect. 21 23
837 94.32 humidity 60.0 14400 > th dose dependent rect. 7 2
841 94.32 radiation 40.0 10 < th dose dependent rect. 16 10
842 94.33 humidity 60.0 14400 < th dose independent rect. 11 2
848 94.33 atmosphere 1000.0 720 < th dose dependent rect. 7 1
888 94.35 radiation 30.0 10 < th dose independent rect. 16 10
904 94.36 humidity 60.0 14400 > th dose independent rect. 11 1
905 94.36 humidity 80.0 14400 < th dose independent rect. 3 11
929 94.38 temperature 10.0 10 > th dose independent rect. 16 10
931 94.38 humidity 60.0 10 > th dose independent rect. 14 12
933 94.38 temperature 10.0 10 > th dose independent rect. 2 14
935 94.38 atmosphere 1015.0 10 < th dose independent rect. 2 14
936 94.38 radiation 1.0 90 < th dose independent rect. 1 22
944 94.38 radiation 40.0 10 < th dose dependent rect. 14 12
948 94.39 precipitation 0.1 10 < th dose independent rect. 16 10
953 94.39 precipitation 0.1 10 < th dose dependent rect. 16 10
973 94.41 temperature 30.0 14400 < th dose independent rect. 14 1
975 94.41 humidity 80.0 14400 > th dose independent rect. 3 11