Os05g0136400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0136400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.93 | 0.481 | 8.85 | -1.77 | 0.956 | -2 | -0.344 | 0.796 | 0.0979 | 17.7 | 29.56 | 89 | -- | -- |
| 105.67 | 0.479 | 8.84 | -1.64 | 0.95 | -2 | -0.535 | -- | 0.132 | 17.7 | 29.45 | 89 | -- | -- |
| 105.19 | 0.478 | 8.86 | -1.79 | 0.955 | -2 | -- | 0.924 | 0.0901 | 17.8 | 29.5 | 89 | -- | -- |
| 106.31 | 0.48 | 8.84 | -1.64 | 0.949 | -1.99 | -- | -- | 0.132 | 17.8 | 29.4 | 90 | -- | -- |
| 141.01 | 0.553 | 8.86 | -1.97 | -- | -2.66 | -- | 0.804 | -0.0692 | -- | 29.96 | 172 | -- | -- |
| 159.75 | 0.593 | 8.75 | -1.14 | 1.49 | -- | -0.379 | -- | 0.536 | 16.6 | -- | -- | -- | -- |
| 160.13 | 0.593 | 8.75 | -1.14 | 1.49 | -- | -- | -- | 0.534 | 16.6 | -- | -- | -- | -- |
| 141.3 | 0.554 | 8.85 | -1.82 | -- | -2.7 | -- | -- | -0.0173 | -- | 29.9 | 154 | -- | -- |
| 169.12 | 0.609 | 8.77 | -- | 1.2 | -1.28 | -- | -- | 0.44 | 17.4 | 29.57 | 62 | -- | -- |
| 278.36 | 0.78 | 8.73 | -1.2 | -- | -- | -- | -- | 0.495 | -- | -- | -- | -- | -- |
| 194.34 | 0.652 | 8.72 | -- | 1.51 | -- | -- | -- | 0.661 | 16.6 | -- | -- | -- | -- |
| 223.41 | 0.696 | 8.75 | -- | -- | -2.16 | -- | -- | 0.362 | -- | 30.73 | 121 | -- | -- |
| 316.12 | 0.83 | 8.7 | -- | -- | -- | -- | -- | 0.628 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.89 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 2 | 100.94 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 3 | 101.75 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 8 | 103.50 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 9 | 103.53 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 10 | 103.66 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 16 | 104.54 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 20 | 104.99 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 22 | 105.11 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 28 | 105.99 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 31 | 106.22 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 34 | 106.27 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 41 | 106.63 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 42 | 106.64 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 46 | 106.93 | temperature | 30.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 49 | 107.07 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 61 | 107.54 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 72 | 107.99 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 73 | 108.02 | temperature | 10.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 91 | 108.58 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 100 | 108.82 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 103 | 108.89 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 114 | 109.25 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 119 | 109.31 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 213 | 111.74 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 225 | 111.93 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 306 | 113.46 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 310 | 113.52 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 423 | 115.15 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 435 | 115.24 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 445 | 115.34 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 459 | 115.42 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 460 | 115.42 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 486 | 115.65 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 487 | 115.66 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 493 | 115.68 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 562 | 116.28 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 563 | 116.29 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 567 | 116.30 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 569 | 116.32 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 570 | 116.33 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 579 | 116.37 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 585 | 116.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 658 | 116.77 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 793 | 117.35 | wind | 5.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 808 | 117.40 | wind | 5.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 811 | 117.40 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 854 | 117.55 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 953 | 117.91 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 982 | 118.05 | wind | 5.0 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 991 | 118.06 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 998 | 118.10 | wind | 5.0 | 43200 | > th | dose independent | rect. | 17 | 6 |