Os05g0136200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os05g0136200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.99 | 0.418 | 11.7 | -0.128 | 1.56 | 1.88 | 1.64 | -0.679 | 0.114 | 4.78 | 9.9 | 717 | -- | -- |
| 79.07 | 0.414 | 11.7 | -0.126 | 1.55 | 1.88 | 1.18 | -- | 0.119 | 4.86 | 9.338 | 707 | -- | -- |
| 77.71 | 0.411 | 11.7 | -0.136 | 1.39 | 1.83 | -- | 1.68 | 0.121 | 5.54 | 7.993 | 624 | -- | -- |
| 80.9 | 0.419 | 11.7 | -0.0972 | 1.19 | 2.13 | -- | -- | 0.115 | 5.72 | 6.414 | 629 | -- | -- |
| 81.01 | 0.419 | 11.7 | -0.021 | -- | 3.41 | -- | 1.38 | 0.181 | -- | 3.938 | 651 | -- | -- |
| 91.35 | 0.448 | 11.7 | -0.162 | 2.99 | -- | 1.17 | -- | 0.0155 | 5.26 | -- | -- | -- | -- |
| 94.76 | 0.456 | 11.7 | -0.16 | 2.99 | -- | -- | -- | 0.0103 | 5.28 | -- | -- | -- | -- |
| 84.17 | 0.427 | 11.7 | 0.00415 | -- | 3.45 | -- | -- | 0.194 | -- | 4.07 | 652 | -- | -- |
| 80.62 | 0.418 | 11.7 | -- | 0.964 | 2.34 | -- | -- | 0.136 | 5.9 | 4.381 | 626 | -- | -- |
| 562.57 | 1.11 | 11.7 | -0.0567 | -- | -- | -- | -- | 0.085 | -- | -- | -- | -- | -- |
| 95.43 | 0.457 | 11.7 | -- | 2.99 | -- | -- | -- | 0.0281 | 5.29 | -- | -- | -- | -- |
| 84.16 | 0.427 | 11.7 | -- | -- | 3.44 | -- | -- | 0.194 | -- | 4.07 | 650 | -- | -- |
| 562.66 | 1.11 | 11.7 | -- | -- | -- | -- | -- | 0.0913 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.12 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 8 | 14 |
| 3 | 74.62 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 8 | 20 |
| 10 | 74.99 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 14 | 8 |
| 25 | 75.54 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 4 |
| 37 | 75.70 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 1 | 16 |
| 44 | 75.83 | radiation | 10.0 | 720 | < th | dose independent | rect. | 9 | 13 |
| 46 | 75.88 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 76 | 76.24 | radiation | 10.0 | 720 | < th | dose independent | rect. | 13 | 9 |
| 92 | 76.51 | radiation | 10.0 | 720 | < th | dose dependent | sin | 21 | NA |
| 98 | 76.56 | radiation | 10.0 | 720 | < th | dose independent | rect. | 9 | 19 |
| 100 | 76.57 | radiation | 20.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 103 | 76.59 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 129 | 76.83 | radiation | 10.0 | 720 | < th | dose independent | rect. | 13 | 16 |
| 156 | 76.98 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 1 | 19 |
| 165 | 77.06 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 15 | 7 |
| 175 | 77.15 | radiation | 10.0 | 720 | > th | dose independent | rect. | 13 | 4 |
| 198 | 77.30 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 1 | 21 |
| 263 | 77.60 | humidity | 90.0 | 270 | < th | dose independent | rect. | 12 | 13 |
| 291 | 77.73 | radiation | 10.0 | 720 | < th | dose independent | sin | 19 | NA |
| 339 | 77.92 | radiation | 10.0 | 720 | < th | dose independent | rect. | 1 | 16 |
| 369 | 78.07 | radiation | 10.0 | 720 | < th | dose independent | sin | 14 | NA |
| 394 | 78.11 | temperature | 25.0 | 270 | < th | dose independent | sin | 16 | NA |
| 434 | 78.29 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 438 | 78.29 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 19 | 22 |
| 469 | 78.47 | humidity | 90.0 | 270 | > th | dose independent | rect. | 14 | 8 |
| 477 | 78.51 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 478 | 78.52 | temperature | 25.0 | 270 | > th | dose independent | rect. | 13 | 12 |
| 485 | 78.54 | humidity | 90.0 | 270 | > th | dose independent | rect. | 10 | 12 |
| 541 | 78.74 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 547 | 78.77 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 550 | 78.79 | humidity | 90.0 | 270 | > th | dose independent | sin | 19 | NA |
| 569 | 78.84 | temperature | 25.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 593 | 78.88 | radiation | 10.0 | 720 | < th | dose independent | rect. | 1 | 19 |
| 600 | 78.89 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 627 | 78.95 | radiation | 10.0 | 720 | > th | dose independent | sin | 16 | NA |
| 634 | 78.96 | radiation | 10.0 | 720 | < th | dose independent | rect. | 1 | 21 |
| 651 | 79.02 | radiation | 10.0 | 720 | < th | dose dependent | no | NA | NA |
| 658 | 79.04 | humidity | 80.0 | 270 | > th | dose dependent | sin | 19 | NA |
| 677 | 79.08 | radiation | 20.0 | 720 | > th | dose independent | rect. | 15 | 1 |
| 688 | 79.11 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 17 | 5 |
| 728 | 79.18 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 979 | 79.62 | humidity | 90.0 | 270 | < th | dose independent | sin | 19 | NA |