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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0135500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.99 (0.0923) R2 : 0.59
β1 : -6.99 (0.345) R2dD : 0.468 R2D : 0.43
β2 : 0.539 (0.218) R2dC : 0.00554 R2C : 0.00795
β3 : -2.49 (0.398) R2dE : 0.0602 R2E : 0.0873
β4 : -3.32 (0.946) R2dD*C : 0.0111 R2D*C : 0.0026
β5 : 12.4 (1.3) R2dD*E : 0.117 R2D*E : -0.0708
γ1 : -1.75 (0.2) R2dN8 : 0.112 R2N8 : -0.0532
σ : 1.61
deviance : 1168.19
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_____
C
peak time of C : 19.8
E
wheather : wind
threshold : 0.9
memory length : 4282
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6
open length of G : 1.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1168.19 1.61 4.99 -6.99 0.539 -2.49 -3.32 12.4 -1.75 19.8 0.9 4282 6 1.1
1334.4 1.7 5.3 -6.92 0.466 -2.07 -3.29 -- -1.67 20.1 1.103 4953 5.6 1.02
1198.96 1.61 5 -6.85 0.551 -2.53 -- 12.7 -1.79 20.1 0.9 4284 6 1.09
1368.35 1.72 5.38 -6.61 0.362 -2.39 -- -- -1.93 20 1.161 4684 5.7 0.85
1213 1.62 4.97 -6.85 -- -2.59 -- 12.7 -1.73 -- 0.8728 4333 6 1.1
1428.15 1.77 5.23 -7.22 0.634 -- -3.78 -- -1.29 19.9 -- -- -- --
1468.49 1.79 5.23 -7.13 0.639 -- -- -- -1.29 20.7 -- -- -- --
1377.5 1.73 5.37 -6.53 -- -2.37 -- -- -1.93 -- 1.156 4686 5.7 0.85
2264.56 2.22 5.34 -- 0.146 -4.4 -- -- -1.67 18.7 1.329 4317 5.57 1.12
1491.64 1.8 5.21 -7.13 -- -- -- -- -1.3 -- -- -- -- --
2807.25 2.48 5.05 -- 0.673 -- -- -- -0.499 19.9 -- -- -- --
2262.96 2.22 5.41 -- -- -4.7 -- -- -1.83 -- 1.3 4318 5.55 1.12
2831.94 2.48 5.04 -- -- -- -- -- -0.508 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1169.17 wind 1.0 14400 < th dose independent rect. 24 4
2 1170.28 wind 1.0 14400 > th dose independent rect. 24 4
9 1192.93 wind 1.0 4320 < th dose independent rect. 6 1
10 1195.25 wind 1.0 4320 > th dose independent rect. 6 1
12 1201.66 atmosphere 995.0 43200 > th dose independent rect. 20 14
15 1202.30 atmosphere 995.0 43200 < th dose independent rect. 21 13
24 1205.90 wind 3.0 4320 < th dose dependent rect. 5 2
25 1206.17 atmosphere 995.0 43200 < th dose dependent sin 11 NA
26 1206.23 wind 1.0 14400 < th dose dependent rect. 1 3
27 1206.25 wind 5.0 4320 < th dose dependent rect. 5 4
28 1206.49 radiation 40.0 43200 > th dose independent rect. 7 1
44 1206.49 radiation 40.0 43200 > th dose dependent rect. 7 1
60 1206.73 atmosphere 995.0 43200 > th dose independent sin 8 NA
61 1206.94 atmosphere 995.0 43200 < th dose independent sin 8 NA
62 1207.81 wind 1.0 4320 < th dose independent rect. 5 3
64 1208.18 wind 1.0 43200 > th dose independent rect. 17 18
70 1209.28 atmosphere 995.0 43200 < th dose independent rect. 23 10
72 1209.94 atmosphere 995.0 43200 > th dose independent rect. 1 8
75 1210.13 wind 1.0 4320 > th dose independent rect. 5 3
77 1210.49 atmosphere 995.0 43200 > th dose independent rect. 4 4
81 1210.66 wind 3.0 4320 > th dose independent rect. 8 1
84 1211.07 atmosphere 995.0 43200 < th dose dependent rect. 3 5
87 1211.69 atmosphere 995.0 43200 < th dose independent rect. 3 5
94 1212.67 wind 1.0 43200 < th dose independent rect. 17 19
96 1213.07 wind 5.0 14400 < th dose dependent rect. 8 1
102 1214.45 wind 1.0 14400 < th dose independent rect. 13 20
109 1215.11 wind 1.0 4320 > th dose dependent rect. 5 4
112 1215.35 wind 1.0 14400 < th dose independent rect. 22 11
113 1215.48 wind 1.0 4320 > th dose dependent rect. 8 1
120 1216.00 wind 1.0 43200 > th dose independent sin 13 NA
122 1216.02 atmosphere 995.0 43200 < th dose dependent rect. 21 12
134 1217.04 humidity 90.0 14400 > th dose dependent rect. 12 3
143 1217.62 humidity 90.0 14400 < th dose independent rect. 4 1
156 1218.63 wind 3.0 14400 > th dose independent rect. 7 3
159 1218.68 wind 1.0 14400 < th dose independent sin 11 NA
160 1218.86 wind 1.0 14400 > th dose independent rect. 22 11
161 1218.93 wind 1.0 14400 < th dose dependent rect. 13 19
162 1219.02 wind 1.0 14400 < th dose dependent rect. 1 9
168 1219.41 wind 3.0 43200 < th dose dependent rect. 22 1
170 1219.56 wind 1.0 14400 < th dose dependent rect. 22 10
183 1220.94 wind 1.0 14400 < th dose dependent rect. 22 12
185 1220.98 wind 1.0 14400 < th dose dependent rect. 1 15
187 1221.06 wind 1.0 14400 < th dose dependent rect. 1 17
188 1221.10 wind 3.0 1440 < th dose independent rect. 8 1
197 1221.80 temperature 20.0 14400 < th dose independent rect. 17 1
205 1222.11 radiation 30.0 4320 > th dose independent rect. 15 17
220 1223.11 humidity 90.0 14400 > th dose dependent rect. 12 1
222 1223.30 wind 5.0 4320 < th dose dependent rect. 23 11
232 1223.56 humidity 90.0 14400 < th dose independent rect. 3 3
239 1224.18 wind 1.0 43200 > th dose independent rect. 16 13
241 1224.26 temperature 20.0 14400 > th dose independent rect. 16 1
249 1224.72 wind 1.0 43200 < th dose independent sin 14 NA
251 1224.78 wind 1.0 14400 > th dose independent rect. 13 18
296 1226.29 wind 1.0 14400 < th dose dependent rect. 22 20
300 1226.35 temperature 20.0 14400 < th dose dependent rect. 19 1
358 1228.61 wind 1.0 14400 < th dose dependent sin 7 NA
401 1230.31 temperature 20.0 4320 < th dose independent rect. 19 1
402 1230.31 precipitation 0.1 14400 > th dose independent rect. 12 1
403 1230.31 precipitation 0.1 14400 > th dose dependent rect. 12 1
435 1231.59 wind 1.0 43200 < th dose dependent rect. 2 23
447 1232.08 humidity 70.0 43200 < th dose independent rect. 1 6
471 1232.57 temperature 20.0 4320 > th dose independent rect. 19 1
545 1234.81 temperature 20.0 4320 < th dose independent sin 18 NA
613 1236.45 temperature 20.0 4320 < th dose independent rect. 10 15
626 1236.69 humidity 70.0 43200 > th dose independent rect. 1 6
647 1237.18 temperature 20.0 4320 > th dose independent sin 18 NA
651 1237.24 temperature 20.0 4320 < th dose independent rect. 16 9
700 1238.07 wind 1.0 4320 > th dose dependent rect. 22 12
702 1238.13 temperature 20.0 4320 > th dose independent rect. 10 17
755 1238.98 temperature 20.0 4320 > th dose independent rect. 15 12
920 1241.16 humidity 90.0 14400 > th dose independent rect. 12 1
940 1241.40 temperature 20.0 14400 < th dose dependent sin 19 NA
942 1241.41 temperature 20.0 4320 > th dose independent rect. 7 20
943 1241.43 wind 3.0 14400 < th dose independent rect. 22 2
988 1242.10 wind 1.0 14400 < th dose dependent rect. 5 23