Os05g0135400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase family protein.
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Os05g0135400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.76 | 0.483 | 6.27 | 9.27 | 0.292 | 128 | -1.2 | 381 | -0.0829 | 4.04 | 1.037 | 1364 | 11 | 0.956 |
| 183.9 | 0.636 | 3.17 | -0.599 | 0.411 | 0.111 | -1.93 | -- | -0.2 | 4.38 | 7.02 | 182 | 11.1 | 2.44 |
| 109.75 | 0.488 | 6.28 | 9.31 | 0.295 | 128 | -- | 382 | -0.075 | 4.72 | 1.282 | 1334 | 11 | 0.916 |
| 176.57 | 0.619 | 3.09 | -0.333 | 0.513 | 0.613 | -- | -- | -0.0705 | 7.14 | 18.24 | 1212 | 11.8 | 3.31 |
| 114.3 | 0.498 | 6.29 | 9.34 | -- | 128 | -- | 383 | -0.069 | -- | 1.868 | 1342 | 10.9 | 1 |
| 183.91 | 0.636 | 3.17 | -0.598 | 0.411 | -- | -1.93 | -- | -0.201 | 4.38 | -- | -- | -- | -- |
| 193.97 | 0.652 | 3.17 | -0.581 | 0.404 | -- | -- | -- | -0.19 | 4.79 | -- | -- | -- | -- |
| 178.22 | 0.622 | 3.16 | -0.393 | -- | 0.716 | -- | -- | -0.0382 | -- | 0.9581 | 1233 | 12.5 | 3.55 |
| 175.41 | 0.617 | 3.15 | -- | 0.46 | 0.796 | -- | -- | -0.0648 | 5.77 | 11.63 | 1218 | 11.6 | 3.02 |
| 202.62 | 0.665 | 3.17 | -0.566 | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
| 202.88 | 0.666 | 3.15 | -- | 0.394 | -- | -- | -- | -0.126 | 4.84 | -- | -- | -- | -- |
| 152.79 | 0.576 | 3.15 | -- | -- | 2.36 | -- | -- | -0.0446 | -- | 0.5584 | 1217 | 11.8 | 3.52 |
| 211.07 | 0.678 | 3.16 | -- | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.67 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 113.67 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 117.46 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 4 | 117.46 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 7 | 126.13 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 8 | 126.13 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 18 | 127.16 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 20 | 127.22 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 26 | 127.68 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 81 | 135.99 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 83 | 136.95 | wind | 1.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 86 | 138.12 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 95 | 140.13 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 96 | 140.30 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 99 | 140.81 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 106 | 141.07 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 121 | 142.01 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 126 | 142.22 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 19 | 6 |
| 130 | 142.32 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 132 | 142.32 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 134 | 142.32 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 185 | 142.32 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 187 | 142.32 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 189 | 142.32 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 242 | 142.42 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 250 | 142.96 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 21 | 2 |
| 260 | 143.37 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 6 |
| 282 | 144.33 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 283 | 144.34 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 7 |
| 320 | 145.53 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 334 | 145.94 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 9 |
| 344 | 146.08 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 5 |
| 358 | 146.42 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 364 | 146.55 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 387 | 147.13 | wind | 1.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 491 | 148.94 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 502 | 149.14 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 508 | 149.27 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 15 | 10 |
| 514 | 149.40 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 516 | 149.43 | wind | 1.0 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 601 | 150.56 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 5 |
| 626 | 150.91 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 706 | 151.25 | wind | 5.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 719 | 151.41 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 746 | 151.89 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 757 | 152.04 | wind | 7.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 776 | 152.26 | wind | 5.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 815 | 152.54 | wind | 7.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 876 | 152.81 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 907 | 153.04 | humidity | 90.0 | 30 | > th | dose independent | rect. | 24 | 10 |
| 927 | 153.21 | wind | 5.0 | 4320 | > th | dose independent | rect. | 21 | 1 |