Os05g0135200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase family protein.
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Os05g0135200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.56 | 0.403 | 3.21 | -0.095 | 0.207 | -0.376 | -0.0971 | 0.975 | -0.101 | 8.96 | 70.35 | 4238 | -- | -- |
| 74.67 | 0.402 | 3.21 | -0.0302 | 0.197 | -0.333 | -0.0755 | -- | -0.0923 | 8.85 | 72 | 4365 | -- | -- |
| 73.4 | 0.399 | 3.21 | -0.103 | 0.201 | -0.411 | -- | 1.07 | -0.125 | 8.95 | 71.02 | 4254 | -- | -- |
| 74.7 | 0.403 | 3.21 | -0.0269 | 0.199 | -0.337 | -- | -- | -0.0895 | 8.92 | 71.99 | 4365 | -- | -- |
| 75.71 | 0.405 | 3.21 | -0.0886 | -- | -0.417 | -- | 1.1 | -0.133 | -- | 72.29 | 4310 | -- | -- |
| 76.25 | 0.409 | 3.19 | -0.0243 | 0.205 | -- | -0.122 | -- | -0.0324 | 8.74 | -- | -- | -- | -- |
| 76.3 | 0.409 | 3.19 | -0.0279 | 0.205 | -- | -- | -- | -0.0322 | 8.93 | -- | -- | -- | -- |
| 77.01 | 0.409 | 3.21 | -0.0345 | -- | -0.338 | -- | -- | -0.0906 | -- | 72 | 4377 | -- | -- |
| 74.72 | 0.403 | 3.21 | -- | 0.202 | -0.335 | -- | -- | -0.0867 | 8.91 | 71.86 | 4365 | -- | -- |
| 78.7 | 0.415 | 3.2 | -0.028 | -- | -- | -- | -- | -0.0308 | -- | -- | -- | -- | -- |
| 76.32 | 0.409 | 3.19 | -- | 0.205 | -- | -- | -- | -0.0291 | 8.94 | -- | -- | -- | -- |
| 77.02 | 0.409 | 3.21 | -- | -- | -0.345 | -- | -- | -0.0863 | -- | 71.27 | 4377 | -- | -- |
| 78.72 | 0.414 | 3.2 | -- | -- | -- | -- | -- | -0.0277 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.23 | wind | 5.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 5 | 65.23 | wind | 5.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 9 | 65.41 | wind | 7.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 10 | 65.48 | humidity | 90.0 | 90 | > th | dose independent | rect. | 8 | 2 |
| 12 | 65.61 | wind | 7.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 13 | 65.76 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 8 | 2 |
| 43 | 66.51 | wind | 9.0 | 90 | > th | dose dependent | rect. | 22 | 12 |
| 111 | 69.71 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 135 | 70.28 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 137 | 70.30 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 153 | 70.54 | wind | 1.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 155 | 70.60 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 162 | 70.68 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 165 | 70.73 | wind | 3.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 166 | 70.74 | humidity | 90.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 167 | 70.74 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 175 | 70.75 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 179 | 70.76 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 182 | 70.77 | wind | 5.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 185 | 70.77 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 187 | 70.77 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 189 | 70.77 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 193 | 70.77 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 194 | 70.77 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 196 | 70.77 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 201 | 70.77 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 202 | 70.77 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 203 | 70.77 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 208 | 70.77 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 226 | 70.87 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 254 | 70.92 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 259 | 70.93 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 260 | 70.95 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 268 | 71.02 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 274 | 71.09 | wind | 9.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 280 | 71.14 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 284 | 71.18 | wind | 7.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 297 | 71.29 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 303 | 71.35 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 12 |
| 332 | 71.48 | wind | 9.0 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 342 | 71.51 | wind | 7.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 371 | 71.63 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 373 | 71.64 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 14 |
| 427 | 71.93 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 458 | 72.04 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 500 | 72.19 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 508 | 72.21 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 518 | 72.24 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 523 | 72.25 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 20 | 11 |
| 526 | 72.27 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 536 | 72.27 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 547 | 72.27 | wind | 9.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 550 | 72.29 | wind | 7.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 553 | 72.32 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 554 | 72.32 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 559 | 72.34 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 599 | 72.43 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 612 | 72.46 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 613 | 72.47 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 614 | 72.47 | atmosphere | 1010.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 672 | 72.52 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 18 |
| 677 | 72.53 | wind | 9.0 | 4320 | < th | dose independent | rect. | 12 | 7 |
| 692 | 72.56 | humidity | 70.0 | 30 | > th | dose independent | rect. | 3 | 6 |
| 704 | 72.57 | wind | 9.0 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 708 | 72.57 | wind | 1.0 | 90 | > th | dose dependent | rect. | 1 | 11 |
| 713 | 72.58 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 6 |
| 714 | 72.58 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 3 | 6 |
| 717 | 72.59 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 20 | 13 |
| 757 | 72.61 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 764 | 72.62 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 767 | 72.62 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 23 |
| 782 | 72.62 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 783 | 72.63 | radiation | 30.0 | 30 | < th | dose independent | rect. | 3 | 6 |
| 784 | 72.63 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 785 | 72.63 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 786 | 72.63 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 788 | 72.63 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 789 | 72.63 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 795 | 72.63 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 804 | 72.63 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 823 | 72.65 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 8 |
| 832 | 72.65 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 867 | 72.70 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 868 | 72.70 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 6 |
| 873 | 72.70 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 18 |
| 941 | 72.77 | wind | 5.0 | 720 | < th | dose independent | rect. | 3 | 6 |
| 947 | 72.77 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 952 | 72.78 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 954 | 72.78 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 3 | 6 |
| 957 | 72.78 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 958 | 72.79 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 964 | 72.79 | wind | 7.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 970 | 72.80 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 18 |
| 990 | 72.83 | wind | 7.0 | 90 | < th | dose independent | sin | 7 | NA |
| 992 | 72.83 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 6 |
| 993 | 72.83 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 6 |
| 995 | 72.83 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 6 |
| 996 | 72.83 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 6 |
| 998 | 72.83 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 6 |
| 999 | 72.83 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 6 |