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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0135100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0175) R2 : 0.0041
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0504 (0.0368) R2dN8 : 0.00529 R2N8 : 0.0041
σ : 0.329
deviance : 49.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.85 0.322 3.04 -0.0551 0.0795 -0.289 0.195 1.24 0.0402 11.4 1 16 -- --
48.14 0.323 3.03 -0.0103 0.0784 -0.209 0.287 -- 0.0535 11.9 1 16 -- --
46.99 0.319 3.04 -0.048 0.0813 -0.281 -- 1.3 0.04 10.6 1 16 -- --
48.41 0.324 3.03 0.00471 0.0849 -0.186 -- -- 0.054 10.1 1 16 -- --
47.38 0.321 3.04 -0.0492 -- -0.274 -- 1.3 0.0393 -- 1.022 16 -- --
49.09 0.328 3.03 0.0223 0.0984 -- 0.148 -- 0.0527 8.99 -- -- -- --
49.12 0.328 3.03 0.0262 0.104 -- -- -- 0.0521 7.97 -- -- -- --
48.85 0.326 3.03 0.00307 -- -0.184 -- -- 0.054 -- 1.016 16 -- --
48.41 0.324 3.03 -- 0.0854 -0.182 -- -- 0.0538 9.85 1.1 16 -- --
49.72 0.329 3.03 0.0273 -- -- -- -- 0.0534 -- -- -- -- --
49.14 0.328 3.03 -- 0.104 -- -- -- 0.0492 7.95 -- -- -- --
48.85 0.326 3.03 -- -- -0.184 -- -- 0.0538 -- 1.007 16 -- --
49.74 0.329 3.03 -- -- -- -- -- 0.0504 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.22 atmosphere 1015.0 30 < th dose independent rect. 3 23
3 42.13 atmosphere 1000.0 30 > th dose independent rect. 3 23
4 42.16 atmosphere 1005.0 90 > th dose dependent rect. 2 1
5 42.24 radiation 1.0 14400 < th dose dependent rect. 3 1
6 42.26 temperature 25.0 90 > th dose independent rect. 1 1
9 42.28 temperature 20.0 30 > th dose dependent rect. 2 1
12 42.30 wind 9.0 1440 < th dose independent rect. 3 1
13 42.30 temperature 10.0 1440 > th dose independent rect. 3 1
16 42.30 temperature 30.0 1440 < th dose independent rect. 3 1
20 42.30 humidity 50.0 1440 > th dose independent rect. 3 1
29 42.30 atmosphere 995.0 1440 > th dose independent rect. 3 1
30 42.30 radiation 1.0 1440 < th dose independent rect. 3 1
50 42.30 temperature 10.0 1440 > th dose independent rect. 4 23
53 42.30 wind 3.0 30 < th dose dependent rect. 2 1
70 42.31 wind 3.0 30 < th dose independent rect. 2 1
82 42.32 humidity 90.0 30 > th dose independent rect. 2 1
86 42.33 temperature 10.0 30 > th dose independent rect. 2 1
88 42.33 temperature 30.0 30 < th dose independent rect. 2 1
89 42.33 humidity 50.0 30 > th dose independent rect. 2 1
93 42.33 atmosphere 995.0 30 > th dose independent rect. 2 1
94 42.33 atmosphere 1005.0 30 > th dose independent rect. 2 1
95 42.33 atmosphere 1010.0 30 < th dose independent rect. 2 1
97 42.33 radiation 1.0 30 < th dose independent rect. 2 1
102 42.33 precipitation 0.1 30 < th dose independent rect. 2 1
103 42.33 temperature 10.0 30 > th dose independent rect. 3 23
104 42.33 humidity 50.0 30 > th dose dependent rect. 2 1
109 42.33 radiation 1.0 30 < th dose dependent rect. 2 1
114 42.33 precipitation 0.1 30 < th dose dependent rect. 2 1
116 42.34 atmosphere 1015.0 30 < th dose dependent rect. 2 1
122 42.40 temperature 30.0 30 < th dose dependent rect. 2 1
128 42.43 wind 1.0 30 > th dose independent rect. 2 1
135 42.46 precipitation 0.1 30 < th dose independent rect. 3 23
137 42.46 precipitation 0.1 30 < th dose dependent rect. 3 23
180 42.78 wind 9.0 30 < th dose independent rect. 3 23
205 44.07 humidity 50.0 30 > th dose independent rect. 3 23
242 44.63 temperature 30.0 30 < th dose independent rect. 3 23
256 44.87 atmosphere 1005.0 270 > th dose dependent rect. 23 4
264 45.11 humidity 90.0 90 < th dose independent rect. 2 1
277 45.29 temperature 25.0 270 > th dose independent rect. 23 4
279 45.30 wind 9.0 30 < th dose dependent rect. 3 23
284 45.39 radiation 20.0 10 < th dose dependent rect. 3 23
295 45.56 wind 1.0 30 < th dose independent rect. 21 6
305 45.60 temperature 25.0 270 > th dose dependent rect. 23 4
306 45.62 humidity 90.0 90 > th dose independent rect. 8 1
314 45.68 atmosphere 1015.0 1440 < th dose independent rect. 3 1
315 45.68 humidity 90.0 90 > th dose dependent rect. 8 1
322 45.73 wind 5.0 10 > th dose independent rect. 10 1
326 45.73 wind 5.0 10 > th dose dependent rect. 10 1
335 45.77 wind 7.0 90 > th dose dependent rect. 8 1
337 45.78 wind 1.0 30 < th dose independent rect. 10 17
370 45.82 atmosphere 1015.0 10 < th dose independent rect. 16 10
404 45.97 radiation 20.0 10 < th dose independent rect. 3 23
411 46.02 atmosphere 1015.0 270 < th dose independent rect. 24 23
455 46.15 wind 9.0 90 > th dose dependent rect. 22 12
476 46.22 wind 9.0 90 > th dose dependent rect. 19 15
514 46.33 humidity 90.0 270 < th dose independent rect. 23 1
528 46.37 wind 1.0 10 > th dose independent rect. 16 17
535 46.39 wind 1.0 30 > th dose independent rect. 3 23
546 46.44 wind 5.0 90 < th dose independent rect. 3 8
564 46.48 wind 9.0 1440 < th dose independent rect. 4 6
565 46.48 wind 1.0 30 > th dose dependent rect. 2 1
572 46.49 atmosphere 1015.0 90 < th dose independent rect. 3 20
575 46.49 wind 7.0 90 < th dose dependent rect. 3 8
579 46.51 humidity 90.0 270 < th dose independent rect. 23 3
580 46.51 wind 5.0 90 < th dose independent rect. 3 6
591 46.54 atmosphere 1015.0 270 < th dose independent rect. 13 10
593 46.55 wind 7.0 90 < th dose independent rect. 3 20
609 46.57 wind 7.0 90 < th dose dependent rect. 23 4
612 46.57 temperature 10.0 90 > th dose dependent rect. 3 6
643 46.59 temperature 10.0 30 > th dose dependent rect. 3 23
653 46.61 wind 5.0 90 < th dose independent rect. 23 4
654 46.61 wind 7.0 90 < th dose independent rect. 3 16
658 46.62 temperature 10.0 90 > th dose independent rect. 3 6
660 46.62 humidity 50.0 90 > th dose independent rect. 3 6
661 46.62 atmosphere 995.0 90 > th dose independent rect. 3 6
662 46.62 atmosphere 1015.0 90 < th dose independent rect. 3 6
663 46.62 atmosphere 1015.0 10 < th dose independent rect. 14 12
664 46.62 atmosphere 1015.0 30 < th dose independent rect. 16 17
665 46.62 temperature 10.0 90 > th dose independent rect. 9 18
672 46.63 radiation 1.0 270 < th dose independent rect. 6 21
673 46.63 temperature 10.0 270 > th dose dependent rect. 23 1
675 46.63 wind 9.0 90 < th dose dependent rect. 3 6
676 46.64 humidity 80.0 270 > th dose independent rect. 23 1
677 46.64 humidity 90.0 10 > th dose independent rect. 24 3
679 46.64 precipitation 0.1 90 < th dose independent rect. 3 6
681 46.64 precipitation 0.1 90 < th dose independent rect. 9 18
689 46.64 precipitation 0.1 90 < th dose dependent rect. 3 6
691 46.64 precipitation 0.1 90 < th dose dependent rect. 9 18
693 46.65 humidity 90.0 270 < th dose independent rect. 22 5
709 46.66 temperature 30.0 90 < th dose independent rect. 3 6
715 46.67 radiation 30.0 90 < th dose independent rect. 3 6
736 46.68 wind 1.0 30 < th dose dependent rect. 10 17
744 46.70 wind 5.0 270 < th dose independent rect. 23 1
754 46.71 atmosphere 1005.0 90 > th dose independent rect. 23 4
756 46.71 atmosphere 995.0 90 > th dose independent rect. 3 20
758 46.71 temperature 10.0 90 > th dose dependent rect. 23 4
762 46.71 atmosphere 1000.0 10 > th dose dependent rect. 20 8
764 46.72 temperature 15.0 90 > th dose independent rect. 23 4
765 46.72 radiation 40.0 90 < th dose independent rect. 11 16
766 46.72 wind 9.0 90 < th dose independent rect. 9 18
772 46.73 temperature 10.0 1440 > th dose independent rect. 4 6
775 46.73 atmosphere 995.0 1440 > th dose independent rect. 4 6
776 46.73 atmosphere 1015.0 1440 < th dose independent rect. 4 6
777 46.73 temperature 10.0 1440 > th dose independent rect. 10 18
780 46.73 radiation 40.0 90 < th dose independent rect. 9 18
783 46.73 radiation 10.0 270 < th dose dependent rect. 6 21
784 46.74 wind 1.0 10 > th dose independent sin 13 NA
786 46.74 temperature 15.0 270 > th dose independent rect. 23 1
792 46.74 atmosphere 995.0 90 > th dose dependent rect. 19 8
794 46.74 wind 9.0 90 < th dose dependent rect. 3 16
797 46.75 atmosphere 1015.0 270 < th dose independent rect. 16 14
806 46.75 wind 9.0 90 < th dose dependent rect. 19 8
807 46.75 wind 7.0 10 < th dose dependent rect. 20 8
814 46.76 atmosphere 995.0 90 > th dose dependent rect. 3 6
820 46.77 humidity 50.0 90 > th dose dependent rect. 3 6
843 46.80 wind 1.0 270 > th dose independent rect. 23 1
847 46.80 precipitation 0.1 90 < th dose independent rect. 23 4
848 46.80 atmosphere 1015.0 720 < th dose independent rect. 10 15
852 46.80 precipitation 0.1 90 < th dose dependent rect. 23 4
863 46.81 temperature 30.0 90 < th dose independent rect. 23 4
864 46.81 humidity 50.0 90 > th dose independent rect. 23 4
867 46.81 atmosphere 995.0 90 > th dose independent rect. 23 4
868 46.81 radiation 1.0 90 < th dose independent rect. 23 4
874 46.81 temperature 10.0 90 > th dose independent rect. 3 20
876 46.81 radiation 1.0 90 < th dose dependent rect. 23 4
912 46.84 temperature 25.0 10 < th dose independent rect. 22 6
928 46.85 radiation 40.0 90 < th dose dependent rect. 3 6
929 46.85 wind 9.0 90 < th dose dependent rect. 3 12
931 46.86 temperature 25.0 1440 < th dose independent rect. 1 1
955 46.87 temperature 30.0 270 < th dose independent rect. 23 1
956 46.87 humidity 50.0 270 > th dose independent rect. 23 1
959 46.87 atmosphere 995.0 270 > th dose independent rect. 23 1
960 46.87 radiation 1.0 270 < th dose independent rect. 23 1
965 46.87 precipitation 0.1 270 < th dose independent rect. 23 1
976 46.87 temperature 10.0 270 > th dose independent rect. 24 23
978 46.87 radiation 1.0 270 < th dose dependent rect. 23 1
983 46.87 precipitation 0.1 270 < th dose dependent rect. 23 1
995 46.88 wind 7.0 10 < th dose independent rect. 4 19
998 46.88 humidity 50.0 90 > th dose dependent rect. 23 4