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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0135000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.0257) R2 : 7.56e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0101 (0.0542) R2dN8 : 9.76e-05 R2N8 : 7.56e-05
σ : 0.485
deviance : 107.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
99.86 0.47 3.37 0.183 0.264 0.205 -0.256 1.49 -0.0053 6.85 89.21 5929 -- --
103 0.473 3.36 0.0938 0.263 0.253 -0.256 -- -0.0433 6.94 106.3 5595 -- --
99.99 0.466 3.37 0.194 0.264 0.218 -- 1.5 -0.00943 7.04 91.12 5943 -- --
103.11 0.473 3.35 0.103 0.277 0.228 -- -- -0.0195 7.01 89.01 10417 -- --
103.61 0.474 3.37 0.197 -- 0.212 -- 1.49 -0.00161 -- 91 5856 -- --
103.85 0.478 3.35 0.0764 0.262 -- -0.294 -- 0.0127 6.73 -- -- -- --
104.05 0.478 3.35 0.0723 0.261 -- -- -- 0.0139 7.01 -- -- -- --
106.81 0.481 3.37 0.108 -- 0.23 -- -- -0.0222 -- 89 10185 -- --
103.38 0.474 3.36 -- 0.269 0.22 -- -- -0.0305 7.05 89 10460 -- --
107.64 0.485 3.36 0.0776 -- -- -- -- 0.0187 -- -- -- -- --
104.19 0.477 3.35 -- 0.262 -- -- -- 0.00582 6.99 -- -- -- --
106.95 0.482 3.37 -- -- 0.246 -- -- -0.0471 -- 103.9 5687 -- --
107.8 0.485 3.36 -- -- -- -- -- 0.0101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 95.53 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 95.91 atmosphere 1005.0 90 > th dose dependent rect. 2 1
6 96.19 temperature 25.0 90 > th dose dependent rect. 1 5
7 96.31 atmosphere 1005.0 10 > th dose dependent rect. 2 2
8 96.49 radiation 1.0 43200 < th dose dependent rect. 3 1
10 96.59 atmosphere 1010.0 30 < th dose dependent rect. 2 1
12 96.76 wind 3.0 30 < th dose independent rect. 2 1
15 96.77 temperature 25.0 90 > th dose independent rect. 1 1
16 96.77 atmosphere 995.0 720 > th dose independent rect. 23 16
17 96.77 wind 3.0 30 < th dose dependent rect. 2 1
26 96.79 temperature 10.0 30 > th dose independent rect. 2 1
28 96.79 temperature 30.0 30 < th dose independent rect. 2 1
29 96.79 humidity 50.0 30 > th dose independent rect. 2 1
32 96.79 atmosphere 995.0 30 > th dose independent rect. 2 1
33 96.79 atmosphere 1010.0 30 < th dose independent rect. 2 1
35 96.79 radiation 1.0 30 < th dose independent rect. 2 1
40 96.79 precipitation 0.1 30 < th dose independent rect. 2 1
41 96.79 temperature 10.0 30 > th dose independent rect. 3 23
43 96.79 temperature 10.0 30 > th dose dependent rect. 2 1
46 96.79 radiation 1.0 30 < th dose dependent rect. 2 1
51 96.79 precipitation 0.1 30 < th dose dependent rect. 2 1
56 96.80 humidity 50.0 30 > th dose dependent rect. 2 1
59 96.81 humidity 90.0 30 > th dose independent rect. 2 1
61 96.81 temperature 30.0 30 < th dose dependent rect. 2 1
66 96.83 precipitation 0.1 720 < th dose independent rect. 15 8
68 96.83 atmosphere 995.0 30 > th dose dependent rect. 2 1
70 96.83 precipitation 0.1 720 < th dose dependent rect. 15 8
74 96.86 atmosphere 1005.0 30 > th dose independent rect. 2 1
77 96.87 temperature 25.0 720 > th dose independent rect. 1 1
80 96.88 wind 1.0 30 > th dose independent rect. 2 1
117 97.01 temperature 10.0 720 > th dose independent rect. 15 8
118 97.01 temperature 10.0 720 > th dose independent rect. 23 16
120 97.04 wind 9.0 30 < th dose independent rect. 3 23
126 97.18 precipitation 0.1 30 < th dose independent rect. 3 23
127 97.18 precipitation 0.1 30 < th dose dependent rect. 3 23
130 97.20 temperature 10.0 720 > th dose independent rect. 3 8
131 97.20 atmosphere 995.0 720 > th dose independent rect. 3 8
132 97.20 temperature 10.0 720 > th dose independent rect. 11 16
137 97.29 temperature 25.0 1440 < th dose independent rect. 1 1
143 97.33 wind 9.0 1440 < th dose independent rect. 3 1
144 97.33 temperature 10.0 1440 > th dose independent rect. 3 1
147 97.33 temperature 30.0 1440 < th dose independent rect. 3 1
151 97.33 humidity 50.0 1440 > th dose independent rect. 3 1
160 97.33 atmosphere 995.0 1440 > th dose independent rect. 3 1
161 97.33 radiation 1.0 1440 < th dose independent rect. 3 1
181 97.33 temperature 10.0 1440 > th dose independent rect. 4 23
199 97.43 wind 9.0 720 < th dose independent rect. 3 8
204 97.59 precipitation 0.1 720 < th dose independent rect. 11 16
205 97.59 precipitation 0.1 720 < th dose dependent rect. 11 16
207 97.60 humidity 50.0 720 > th dose independent rect. 3 8
213 98.02 humidity 90.0 90 < th dose independent rect. 1 6
216 98.12 humidity 50.0 30 > th dose independent rect. 3 23
218 98.16 humidity 80.0 14400 < th dose dependent rect. 4 5
223 98.25 humidity 90.0 720 < th dose independent rect. 1 1
234 98.37 atmosphere 1015.0 720 < th dose independent rect. 3 8
235 98.37 humidity 80.0 4320 < th dose dependent rect. 1 1
236 98.39 temperature 25.0 90 > th dose independent rect. 1 5
245 98.51 temperature 25.0 720 > th dose dependent rect. 1 1
252 98.68 wind 9.0 720 < th dose independent rect. 19 8
259 98.75 humidity 70.0 14400 > th dose independent rect. 8 1
262 98.76 atmosphere 995.0 720 > th dose independent rect. 7 8
263 98.79 precipitation 0.1 720 < th dose independent rect. 19 8
264 98.79 precipitation 0.1 720 < th dose independent rect. 15 16
265 98.79 precipitation 0.1 720 < th dose dependent rect. 19 8
266 98.79 precipitation 0.1 720 < th dose dependent rect. 15 16
268 98.82 humidity 90.0 1440 > th dose independent rect. 2 1
276 98.87 humidity 90.0 90 < th dose independent rect. 2 1
277 98.89 humidity 70.0 14400 > th dose independent rect. 4 5
278 98.89 humidity 70.0 14400 > th dose independent rect. 21 12
279 98.90 humidity 70.0 14400 > th dose independent rect. 1 8
291 98.92 wind 9.0 720 < th dose independent rect. 15 8
292 98.92 temperature 10.0 720 > th dose independent rect. 7 8
293 98.92 atmosphere 1015.0 720 < th dose independent rect. 7 8
294 98.92 temperature 10.0 720 > th dose independent rect. 15 16
296 98.94 temperature 10.0 720 > th dose independent rect. 19 8
297 98.94 temperature 30.0 720 < th dose independent rect. 19 8
298 98.94 humidity 50.0 720 > th dose independent rect. 19 8
299 98.94 atmosphere 995.0 720 > th dose independent rect. 19 8
300 98.94 radiation 1.0 720 < th dose independent rect. 19 8
305 98.94 temperature 10.0 720 > th dose independent rect. 3 16
306 98.94 radiation 1.0 720 < th dose dependent rect. 19 8
320 99.01 temperature 25.0 270 > th dose independent rect. 23 8
347 99.04 temperature 25.0 720 > th dose independent rect. 22 5
348 99.04 temperature 25.0 270 > th dose dependent rect. 24 7
349 99.05 humidity 70.0 14400 < th dose independent rect. 8 1
350 99.05 radiation 40.0 720 < th dose independent rect. 15 8
369 99.23 precipitation 0.1 720 < th dose independent rect. 3 8
370 99.23 precipitation 0.1 720 < th dose dependent rect. 3 8
376 99.29 atmosphere 1015.0 720 < th dose independent rect. 3 16
381 99.33 wind 9.0 4320 > th dose independent rect. 3 11
383 99.34 humidity 70.0 14400 < th dose independent rect. 6 3
395 99.35 temperature 25.0 720 < th dose independent rect. 23 6
403 99.38 wind 1.0 14400 < th dose dependent rect. 6 1
407 99.40 atmosphere 995.0 720 > th dose independent rect. 15 8
408 99.40 wind 9.0 4320 < th dose independent rect. 2 12
410 99.42 wind 9.0 4320 > th dose independent sin 5 NA
414 99.42 precipitation 0.1 720 < th dose independent rect. 23 16
415 99.42 precipitation 0.1 720 < th dose dependent rect. 23 16
429 99.47 temperature 25.0 720 < th dose independent rect. 21 5
434 99.47 wind 9.0 720 < th dose independent rect. 15 16
435 99.47 atmosphere 995.0 720 > th dose independent rect. 11 16
441 99.49 wind 1.0 720 > th dose independent rect. 15 8
444 99.49 temperature 25.0 720 > th dose dependent rect. 7 2
447 99.50 wind 9.0 4320 < th dose independent rect. 23 15
460 99.54 temperature 25.0 720 < th dose independent rect. 21 8
474 99.57 precipitation 0.1 720 < th dose independent rect. 7 8
477 99.57 precipitation 0.1 720 < th dose dependent rect. 7 8
478 99.58 wind 5.0 14400 < th dose independent rect. 11 1
484 99.59 wind 9.0 4320 < th dose independent sin 4 NA
501 99.63 humidity 80.0 4320 < th dose dependent rect. 22 5
506 99.64 wind 7.0 4320 > th dose dependent rect. 3 11
510 99.65 atmosphere 995.0 30 > th dose dependent rect. 3 23
560 99.70 wind 9.0 4320 > th dose dependent sin 5 NA
578 99.75 radiation 10.0 720 > th dose independent rect. 6 3
591 99.75 wind 9.0 720 < th dose independent rect. 23 16
602 99.77 radiation 40.0 720 < th dose independent rect. 15 16
605 99.77 humidity 80.0 720 > th dose dependent rect. 3 1
642 99.84 wind 9.0 4320 > th dose independent rect. 10 4
646 99.84 humidity 50.0 720 > th dose independent rect. 23 16
656 99.87 wind 5.0 14400 < th dose independent rect. 10 5
671 99.89 wind 9.0 4320 < th dose independent rect. 10 4
675 99.89 wind 5.0 14400 < th dose dependent rect. 10 2
679 99.90 wind 3.0 14400 > th dose independent rect. 10 1
680 99.90 wind 1.0 14400 < th dose independent rect. 6 1
686 99.91 temperature 25.0 720 > th dose independent rect. 8 1
715 99.96 humidity 90.0 90 < th dose independent rect. 1 9
728 99.98 wind 9.0 720 < th dose dependent rect. 2 1
732 99.99 wind 5.0 14400 > th dose independent rect. 10 5
741 100.00 temperature 30.0 30 < th dose independent rect. 3 23
747 100.01 wind 7.0 4320 > th dose dependent rect. 10 4
762 100.05 humidity 60.0 4320 > th dose independent rect. 11 1
817 100.09 radiation 10.0 10 < th dose dependent rect. 3 23
822 100.10 humidity 90.0 1440 < th dose independent rect. 24 14
830 100.11 radiation 10.0 270 > th dose independent sin 12 NA
842 100.12 wind 1.0 14400 < th dose dependent rect. 4 4
847 100.13 atmosphere 1000.0 720 > th dose independent rect. 14 1
849 100.13 humidity 90.0 1440 > th dose independent rect. 2 6
856 100.13 radiation 10.0 270 > th dose independent rect. 14 20
868 100.14 humidity 90.0 90 < th dose dependent rect. 2 5
895 100.16 wind 9.0 4320 > th dose independent rect. 18 22
915 100.18 wind 1.0 14400 > th dose independent rect. 5 2
956 100.21 atmosphere 995.0 720 > th dose independent rect. 3 16
957 100.21 humidity 90.0 90 < th dose independent rect. 1 22
982 100.24 wind 9.0 4320 < th dose independent rect. 6 5
992 100.25 humidity 60.0 14400 < th dose dependent rect. 12 1
995 100.25 humidity 80.0 4320 < th dose dependent rect. 20 17