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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0134700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0401) R2 : 0.000683
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0471 (0.0843) R2dN8 : 0.000883 R2N8 : 0.000683
σ : 0.754
deviance : 261.26
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
251.82 0.746 2.87 -0.0365 0.0792 -0.32 -0.199 0.519 0.176 6.77 1005 42 -- --
253.33 0.741 2.87 -0.0527 0.0844 -0.308 -0.189 -- 0.157 6.73 1005 44 -- --
251.88 0.739 2.87 -0.0392 0.0787 -0.322 -- 0.519 0.178 7.23 1005 44 -- --
253.42 0.741 2.87 -0.0558 0.0836 -0.309 -- -- 0.158 7.1 1005 44 -- --
252.21 0.74 2.88 -0.0376 -- -0.314 -- 0.524 0.176 -- 1005 44 -- --
260.95 0.757 2.9 -0.0477 0.0311 -- -0.28 -- 0.04 6.48 -- -- -- --
261.06 0.757 2.9 -0.0503 0.0476 -- -- -- 0.0415 9.99 -- -- -- --
253.78 0.742 2.88 -0.054 -- -0.301 -- -- 0.157 -- 1005 44 -- --
253.5 0.742 2.87 -- 0.0831 -0.308 -- -- 0.164 7.15 1005 44 -- --
261.19 0.755 2.9 -0.0509 -- -- -- -- 0.0415 -- -- -- -- --
261.12 0.756 2.9 -- 0.0478 -- -- -- 0.0471 10.1 -- -- -- --
253.86 0.742 2.87 -- -- -0.3 -- -- 0.163 -- 1005 44 -- --
261.26 0.754 2.9 -- -- -- -- -- 0.0471 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 243.29 atmosphere 1005 10 < th dose independent rect. 16 1
3 245.61 humidity 60 10 < th dose independent rect. 15 4
35 245.93 radiation 10 10 > th dose dependent rect. 16 1
70 246.34 humidity 60 90 < th dose independent rect. 15 2
74 246.46 radiation 10 10 > th dose dependent rect. 16 15
75 246.54 humidity 60 10 < th dose independent rect. 16 1
76 246.57 humidity 60 10 < th dose dependent rect. 15 4
106 246.79 humidity 60 10 < th dose dependent rect. 16 1
210 247.77 humidity 60 10 < th dose independent sin 13 NA
281 248.19 radiation 20 10 > th dose independent rect. 16 1
442 248.41 atmosphere 1010 10 < th dose dependent rect. 15 7
446 248.48 atmosphere 1010 10 < th dose dependent rect. 15 1
449 248.52 humidity 60 10 > th dose independent sin 13 NA
504 248.74 atmosphere 1005 30 < th dose independent rect. 15 7
544 248.84 wind 1 90 < th dose dependent rect. 15 1
550 248.93 wind 5 10 < th dose dependent rect. 16 1
551 248.95 atmosphere 1005 30 > th dose independent rect. 5 23
553 248.98 atmosphere 1005 30 < th dose independent rect. 15 5
555 249.06 humidity 60 10 < th dose independent rect. 12 7
574 249.11 humidity 80 30 < th dose dependent rect. 19 1
600 249.29 humidity 60 30 < th dose dependent sin 13 NA
669 249.53 atmosphere 1005 30 > th dose independent rect. 8 20
678 249.67 atmosphere 1005 30 > th dose independent rect. 12 16
704 249.78 humidity 60 30 < th dose dependent rect. 12 7
721 249.80 atmosphere 1005 30 < th dose independent rect. 15 12
808 249.99 wind 1 90 < th dose independent rect. 15 1
815 250.02 wind 5 10 < th dose independent rect. 15 2
923 250.41 humidity 80 30 < th dose dependent rect. 19 5