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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0134400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase, plant/fungal/bacterial family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.59 (0.0896) R2 : 0.613
β1 : -8.62 (0.334) R2dD : 0.617 R2D : 0.442
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.05 (0.263) R2dE : 0.121 R2E : 0.0102
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.997 (0.193) R2dN8 : 0.0314 R2N8 : -0.0035
σ : 1.67
deviance : 1289.78
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.62
memory length : 1114
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.44
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1266.57 1.67 7.66 -9.56 0.351 3.45 2.66 -5.58 -0.927 6 28.77 1154 7.47 --
1270.76 1.66 7.58 -8.7 0.311 2.93 2.43 -- -0.883 6.03 29.17 1196 7.16 --
1275.91 1.66 7.71 -9.76 0.421 3.76 -- -6.06 -1.15 9.8 27.4 1112 7.76 --
1280.05 1.67 7.57 -8.68 0.444 3.14 -- -- -1.04 9.47 27.43 1085 7.57 --
1285.24 1.67 7.74 -9.88 -- 3.75 -- -6.68 -1.17 -- 27.43 1140 7.65 --
1612.09 1.88 7.64 -7.92 0.646 -- 3.42 -- -1.3 4.78 -- -- -- --
1642.48 1.9 7.65 -7.93 0.667 -- -- -- -1.32 4.7 -- -- -- --
1289.78 1.67 7.59 -8.62 -- 3.05 -- -- -0.997 -- 27.62 1114 7.44 --
3188.5 2.63 7.34 -- 0.698 1.76 -- -- -0.0969 9.26 33.7 967 8.48 --
1666.1 1.91 7.65 -7.91 -- -- -- -- -1.3 -- -- -- -- --
3300.47 2.69 7.45 -- 0.525 -- -- -- -0.437 5.12 -- -- -- --
3172.11 2.62 7.38 -- -- 1.75 -- -- -0.106 -- 31.1 1102 5.9 --
3314.91 2.69 7.46 -- -- -- -- -- -0.426 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1285.20 humidity 70 1440 < th dose dependent rect. 16 3
2 1285.21 humidity 70 1440 < th dose dependent rect. 16 15
14 1285.25 humidity 70 1440 < th dose independent rect. 18 13
15 1285.49 humidity 70 1440 < th dose independent rect. 18 2
42 1293.24 temperature 30 1440 > th dose dependent sin 12 NA
43 1293.71 temperature 30 1440 > th dose dependent rect. 15 4
61 1295.01 temperature 30 1440 > th dose dependent rect. 18 1
94 1296.49 radiation 30 1440 > th dose independent rect. 16 16
114 1298.20 humidity 70 720 > th dose independent rect. 18 8
145 1299.12 radiation 20 1440 < th dose independent rect. 16 12
148 1299.18 radiation 20 1440 > th dose independent rect. 16 1
178 1299.57 radiation 20 1440 < th dose independent rect. 16 1
214 1301.04 radiation 20 1440 < th dose independent rect. 16 9
217 1301.21 radiation 20 1440 < th dose independent rect. 16 5
221 1301.40 radiation 30 1440 > th dose independent rect. 7 1
280 1303.05 humidity 70 1440 > th dose independent rect. 18 13
295 1303.31 humidity 60 1440 > th dose independent rect. 16 3
308 1303.44 humidity 70 1440 > th dose independent rect. 18 3
313 1303.60 humidity 70 1440 < th dose dependent sin 12 NA
322 1304.19 humidity 50 1440 < th dose independent rect. 16 1
323 1304.22 humidity 60 1440 > th dose independent rect. 16 13
327 1304.52 humidity 60 1440 > th dose independent rect. 16 15
341 1305.35 temperature 30 1440 > th dose independent rect. 17 2
391 1306.81 humidity 60 1440 > th dose independent sin 13 NA
395 1307.24 humidity 60 1440 < th dose independent sin 13 NA
443 1309.53 wind 5 43200 > th dose dependent rect. 13 20
462 1309.96 humidity 50 1440 > th dose independent rect. 16 1
465 1310.08 radiation 30 1440 < th dose independent rect. 6 2
468 1310.38 temperature 30 1440 > th dose independent sin 12 NA
469 1310.39 temperature 30 1440 > th dose dependent no NA NA
588 1310.89 temperature 30 1440 < th dose independent sin 12 NA
589 1310.93 radiation 30 1440 < th dose independent rect. 23 9
604 1311.03 temperature 30 1440 < th dose independent rect. 17 11
611 1311.37 temperature 30 1440 < th dose independent rect. 17 14
612 1311.40 temperature 30 1440 < th dose independent rect. 17 8
615 1311.66 radiation 20 1440 > th dose dependent rect. 16 16
618 1311.72 temperature 30 1440 < th dose independent rect. 17 4
649 1313.18 temperature 30 1440 > th dose dependent rect. 17 23
698 1314.11 humidity 50 4320 > th dose independent rect. 13 4
712 1314.99 wind 5 43200 > th dose dependent sin 14 NA
729 1315.24 wind 5 43200 > th dose independent rect. 13 20
781 1316.16 wind 9 43200 > th dose dependent sin 14 NA
823 1317.45 wind 5 43200 < th dose independent rect. 13 21
877 1318.31 humidity 80 43200 > th dose independent rect. 22 1
882 1318.69 radiation 30 1440 < th dose independent rect. 19 13
922 1319.91 wind 5 43200 > th dose independent rect. 15 17
928 1320.37 radiation 30 1440 < th dose independent rect. 2 6
937 1320.60 temperature 30 1440 < th dose independent rect. 15 21
961 1320.99 wind 5 43200 < th dose independent rect. 10 22
969 1321.15 temperature 30 1440 < th dose independent rect. 15 19
979 1321.43 temperature 30 1440 > th dose independent rect. 15 19
988 1321.64 wind 9 43200 > th dose independent sin 13 NA
989 1321.77 wind 5 43200 < th dose independent rect. 15 17