Os05g0134200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase-2C.
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Os05g0134200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase-2C.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.91 | 0.244 | 12.6 | 0.595 | 0.111 | -0.416 | 0.0392 | -1.85 | 0.0712 | 8.95 | 29.45 | 2525 | -- | -- |
| 26.67 | 0.241 | 12.6 | 0.923 | 0.0916 | -0.636 | 0.0497 | -- | 0.152 | 8.83 | 27.9 | 2522 | -- | -- |
| 26.67 | 0.241 | 12.6 | 0.778 | 0.0992 | -0.555 | -- | -0.738 | 0.136 | 8.88 | 27.77 | 2540 | -- | -- |
| 26.67 | 0.241 | 12.6 | 0.929 | 0.0897 | -0.642 | -- | -- | 0.149 | 8.71 | 27.9 | 2521 | -- | -- |
| 27.09 | 0.242 | 12.6 | 0.887 | -- | -0.636 | -- | -0.241 | 0.16 | -- | 27.45 | 2480 | -- | -- |
| 42.29 | 0.305 | 12.6 | 0.74 | 0.159 | -- | 0.2 | -- | 0.181 | 10.8 | -- | -- | -- | -- |
| 42.45 | 0.305 | 12.6 | 0.748 | 0.159 | -- | -- | -- | 0.182 | 10.5 | -- | -- | -- | -- |
| 27.09 | 0.242 | 12.6 | 0.937 | -- | -0.664 | -- | -- | 0.165 | -- | 27.54 | 2478 | -- | -- |
| 47.8 | 0.322 | 12.6 | -- | 0.083 | -0.479 | -- | -- | 0.066 | 8.81 | 28.2 | 1095 | -- | -- |
| 44 | 0.31 | 12.6 | 0.745 | -- | -- | -- | -- | 0.181 | -- | -- | -- | -- | -- |
| 57.19 | 0.354 | 12.6 | -- | 0.155 | -- | -- | -- | 0.0985 | 10.1 | -- | -- | -- | -- |
| 48.06 | 0.323 | 12.6 | -- | -- | -0.513 | -- | -- | 0.053 | -- | 28.04 | 1049 | -- | -- |
| 58.65 | 0.357 | 12.6 | -- | -- | -- | -- | -- | 0.0985 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 19 |
| 3 | 24.14 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 17 |
| 20 | 24.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 103 | 26.80 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 107 | 26.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 130 | 26.94 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 161 | 27.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 18 |
| 171 | 27.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 187 | 27.02 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 238 | 27.04 | temperature | 30 | 1440 | > th | dose dependent | sin | 6 | NA |
| 290 | 27.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 300 | 27.12 | temperature | 30 | 1440 | > th | dose independent | sin | 5 | NA |
| 327 | 27.17 | temperature | 30 | 1440 | < th | dose independent | sin | 6 | NA |
| 388 | 27.25 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 394 | 27.25 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 450 | 27.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 487 | 27.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 18 |
| 533 | 27.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 22 |
| 577 | 27.43 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 586 | 27.43 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 588 | 27.44 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 621 | 27.46 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 744 | 27.49 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 749 | 27.50 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 750 | 27.50 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 756 | 27.51 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 764 | 27.52 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 768 | 27.53 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 892 | 27.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 894 | 27.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 927 | 27.57 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 951 | 27.59 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 971 | 27.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 996 | 27.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 23 |