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Os05g0132400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.48 (0.0275) R2 : 0.424
β1 : 0.226 (0.1) R2dD : 0.00672 R2D : 0.00294
β2 : 0.501 (0.0661) R2dC : 0.0731 R2C : 0.07
β3 : 11.5 (0.756) R2dE : 0.666 R2E : -0.384
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 52.9 (3.34) R2dD*E : 0.723 R2D*E : -0.315
γ1 : 0.0815 (0.0585) R2dN8 : 0.00327 R2N8 : 0.000245
σ : 0.512
deviance : 121.08
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C
peak time of C : 10.2
E
wheather : wind
threshold : 4.995
memory length : 94
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.1
open length of G : 1.01

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.06 0.517 6.48 0.225 0.502 11.5 0.0629 52.9 0.0812 10.2 4.995 95 2.1 1.02
204.26 0.666 6.41 0.292 0.409 8.76 1.2 -- 0.232 7.78 3.906 82 2.12 0.596
121.08 0.512 6.48 0.226 0.501 11.5 -- 52.9 0.0815 10.2 4.995 94 2.1 1.01
159.31 0.588 6.45 0.357 0.542 5.78 -- -- 0.0924 9.55 4.113 87 2.2 0.379
136.37 0.544 6.49 0.232 -- 11.4 -- 52.4 0.0768 -- 4.973 94 2.11 0.995
193.76 0.653 6.47 0.203 0.508 -- 0.0441 -- 0.0658 9.55 -- -- -- --
193.77 0.652 6.47 0.205 0.508 -- -- -- 0.0659 9.56 -- -- -- --
169.53 0.606 6.48 0.175 -- 4.46 -- -- 0.0892 -- 4.048 90 2.14 0.413
155.12 0.58 6.47 -- 0.501 4.49 -- -- 0.0701 10.2 3.753 128 2.21 0.258
208.99 0.675 6.49 0.201 -- -- -- -- 0.0672 -- -- -- -- --
194.87 0.653 6.48 -- 0.507 -- -- -- 0.0431 9.53 -- -- -- --
170.33 0.608 6.49 -- -- 4.47 -- -- 0.0698 -- 3.87 134 2.25 0.0576
210.05 0.676 6.49 -- -- -- -- -- 0.0449 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.01 wind 5.0 90 > th dose independent rect. 2 1
2 122.02 wind 5.0 90 > th dose dependent rect. 2 1
4 138.51 wind 5.0 90 > th dose dependent rect. 2 4
8 139.19 wind 5.0 90 > th dose independent rect. 2 4
23 155.83 atmosphere 1005.0 90 < th dose independent rect. 2 1
42 157.84 temperature 30.0 30 < th dose dependent rect. 4 23
44 158.53 wind 5.0 270 > th dose dependent rect. 24 8
53 160.59 temperature 20.0 1440 > th dose independent rect. 21 7
67 161.14 temperature 20.0 1440 < th dose independent rect. 21 7
70 161.21 temperature 20.0 1440 > th dose independent rect. 18 10
82 161.47 precipitation 0.1 270 > th dose independent rect. 24 1
83 161.47 precipitation 0.1 270 > th dose dependent rect. 24 1
98 161.67 temperature 20.0 1440 > th dose independent rect. 13 16
100 161.69 temperature 20.0 1440 > th dose independent rect. 9 20
149 162.14 temperature 20.0 1440 > th dose independent sin 13 NA
150 162.14 temperature 20.0 1440 > th dose independent rect. 1 2
166 162.21 temperature 20.0 1440 < th dose independent rect. 13 16
171 162.22 temperature 20.0 1440 < th dose independent rect. 9 20
172 162.22 temperature 25.0 270 < th dose dependent rect. 4 19
190 162.33 temperature 20.0 720 < th dose independent rect. 4 20
240 162.72 temperature 20.0 1440 < th dose independent sin 13 NA
270 163.10 temperature 20.0 1440 < th dose independent rect. 1 2
318 163.52 temperature 20.0 1440 > th dose independent rect. 18 18
328 163.65 temperature 20.0 1440 > th dose independent rect. 20 16
400 163.94 temperature 20.0 1440 > th dose independent rect. 20 23
413 163.97 temperature 20.0 1440 > th dose independent rect. 5 23
437 164.06 temperature 20.0 1440 > th dose independent no NA NA
448 164.12 temperature 20.0 1440 < th dose independent rect. 18 18
453 164.13 temperature 20.0 1440 < th dose independent rect. 20 16
461 164.17 temperature 15.0 10 > th dose dependent rect. 3 23
471 164.23 temperature 20.0 1440 < th dose independent rect. 18 20
488 164.29 temperature 20.0 1440 > th dose independent rect. 1 23
525 164.48 temperature 25.0 1440 < th dose dependent rect. 21 5
530 164.50 temperature 25.0 1440 < th dose dependent rect. 21 2
561 164.58 temperature 10.0 1440 > th dose dependent rect. 23 3
593 164.68 temperature 20.0 1440 < th dose independent no NA NA
599 164.69 temperature 30.0 1440 < th dose dependent rect. 23 3
620 164.79 temperature 25.0 90 < th dose dependent rect. 7 19
714 165.32 temperature 20.0 720 > th dose independent rect. 4 20
775 165.66 temperature 20.0 720 < th dose independent sin 22 NA
810 165.85 wind 3.0 14400 > th dose independent rect. 1 1
818 165.89 wind 3.0 14400 < th dose independent rect. 1 1
850 166.05 temperature 10.0 10 > th dose dependent no NA NA
898 166.19 temperature 20.0 720 > th dose independent sin 22 NA
940 166.35 wind 1.0 43200 > th dose dependent rect. 23 3
998 166.52 temperature 15.0 270 > th dose dependent rect. 17 23
999 166.52 temperature 30.0 270 < th dose dependent rect. 1 23