Os05g0132300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0132300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.86 | 0.614 | 4.19 | 0.444 | 1.11 | 1.14 | -0.0705 | -0.00229 | 0.263 | 22.2 | 30 | 742 | -- | -- |
| 170.86 | 0.609 | 4.19 | 0.444 | 1.11 | 1.14 | -0.0706 | -- | 0.263 | 22.2 | 30 | 741 | -- | -- |
| 170.88 | 0.609 | 4.19 | 0.447 | 1.11 | 1.14 | -- | -0.00892 | 0.263 | 22.2 | 30 | 741 | -- | -- |
| 170.88 | 0.609 | 4.19 | 0.447 | 1.11 | 1.14 | -- | -- | 0.262 | 22.2 | 30 | 741 | -- | -- |
| 226.58 | 0.701 | 4.23 | 0.258 | -- | 1.68 | -- | 0.0327 | -0.00118 | -- | 24.29 | 759 | -- | -- |
| 199.85 | 0.663 | 4.22 | 0.625 | 1.34 | -- | 0.326 | -- | 0.151 | 21.7 | -- | -- | -- | -- |
| 200.25 | 0.663 | 4.22 | 0.613 | 1.34 | -- | -- | -- | 0.15 | 21.7 | -- | -- | -- | -- |
| 226.37 | 0.701 | 4.22 | 0.238 | -- | 1.69 | -- | -- | -0.0301 | -- | 24.2 | 747 | -- | -- |
| 175.97 | 0.618 | 4.19 | -- | 1.1 | 1.2 | -- | -- | 0.226 | 22.2 | 29.72 | 757 | -- | -- |
| 306.62 | 0.818 | 4.18 | 0.624 | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
| 210.14 | 0.678 | 4.23 | -- | 1.34 | -- | -- | -- | 0.0817 | 21.7 | -- | -- | -- | -- |
| 227.82 | 0.703 | 4.23 | -- | -- | 1.73 | -- | -- | -0.0636 | -- | 24.14 | 753 | -- | -- |
| 316.89 | 0.831 | 4.2 | -- | -- | -- | -- | -- | 0.0785 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.03 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 8 | 168.96 | temperature | 30 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 14 | 169.34 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 21 |
| 31 | 169.89 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 32 | 169.92 | temperature | 30 | 720 | > th | dose dependent | sin | 10 | NA |
| 33 | 169.93 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 22 |
| 36 | 170.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 41 | 170.15 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 14 |
| 43 | 170.22 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 47 | 170.26 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 55 | 170.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 61 | 170.41 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 63 | 170.42 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 64 | 170.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 97 | 170.65 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 22 |
| 112 | 170.72 | temperature | 20 | 14400 | < th | dose dependent | sin | 12 | NA |
| 131 | 170.85 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 138 | 170.87 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 146 | 170.90 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 12 |
| 152 | 170.93 | temperature | 30 | 720 | > th | dose dependent | sin | 18 | NA |
| 166 | 170.96 | temperature | 30 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 182 | 170.97 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |
| 281 | 171.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 9 |
| 342 | 171.12 | temperature | 30 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 378 | 171.18 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 9 |
| 398 | 171.23 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 10 |
| 399 | 171.23 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 20 |
| 401 | 171.23 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 464 | 171.32 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 21 |
| 555 | 171.46 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 589 | 171.61 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 23 |
| 608 | 171.68 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 612 | 171.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 623 | 171.73 | temperature | 30 | 720 | > th | dose independent | sin | 10 | NA |
| 632 | 171.75 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 18 |
| 644 | 171.78 | temperature | 30 | 4320 | < th | dose dependent | rect. | 12 | 18 |
| 646 | 171.79 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 17 |
| 678 | 171.85 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 752 | 171.98 | temperature | 20 | 4320 | > th | dose dependent | sin | 10 | NA |
| 757 | 171.99 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 823 | 172.07 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 10 |
| 866 | 172.12 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 17 |
| 872 | 172.14 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 23 |
| 908 | 172.18 | temperature | 10 | 4320 | > th | dose dependent | sin | 14 | NA |
| 920 | 172.21 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |