Os05g0132100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AMP-dependent synthetase and ligase domain containing protein.
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Os05g0132100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AMP-dependent synthetase and ligase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.94 | 0.488 | 10.4 | -5.61 | 0.709 | 1.83 | 1.08 | -5.98 | -0.783 | 19.6 | 20.58 | 4320 | -- | -- |
| 123.88 | 0.518 | 10.2 | -4.36 | 0.682 | 2.24 | 0.86 | -- | -0.557 | 19.2 | 14.05 | 6916 | -- | -- |
| 111.18 | 0.491 | 10.4 | -5.62 | 0.713 | 1.83 | -- | -5.88 | -0.782 | 19.6 | 20.33 | 4342 | -- | -- |
| 126.55 | 0.524 | 10.2 | -4.3 | 0.737 | 2.22 | -- | -- | -0.55 | 19.5 | 12.21 | 7054 | -- | -- |
| 133.94 | 0.539 | 10.4 | -5.63 | -- | 1.96 | -- | -6.07 | -0.823 | -- | 20.59 | 3418 | -- | -- |
| 206.9 | 0.674 | 10.1 | -3.17 | 0.708 | -- | 1.14 | -- | 0.0223 | 20 | -- | -- | -- | -- |
| 210.79 | 0.68 | 10.1 | -3.2 | 0.707 | -- | -- | -- | 0.0232 | 20 | -- | -- | -- | -- |
| 145.4 | 0.562 | 10.2 | -3.99 | -- | 2.24 | -- | -- | -0.421 | -- | 10.81 | 2104 | -- | -- |
| 471.82 | 1.01 | 10 | -- | 0.76 | 0.478 | -- | -- | 0.344 | 19.3 | 21.9 | 1264 | -- | -- |
| 238.15 | 0.721 | 10.1 | -3.2 | -- | -- | -- | -- | 0.0144 | -- | -- | -- | -- | -- |
| 480.34 | 1.03 | 10 | -- | 0.729 | -- | -- | -- | 0.379 | 19.7 | -- | -- | -- | -- |
| 482.95 | 1.02 | 10 | -- | -- | 0.974 | -- | -- | 0.225 | -- | 20.8 | 611 | -- | -- |
| 509.05 | 1.05 | 9.98 | -- | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.68 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 2 | 100.02 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 101.83 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 13 | 102.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 14 | 102.23 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 15 | 102.23 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 23 | 103.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 27 | 103.96 | wind | 3 | 43200 | > th | dose dependent | rect. | 8 | 8 |
| 31 | 104.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 32 | 104.09 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 34 | 104.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 35 | 104.16 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 36 | 104.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 44 | 104.35 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 54 | 104.44 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 58 | 104.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 108 | 105.28 | wind | 5 | 43200 | < th | dose independent | sin | 23 | NA |
| 119 | 105.40 | wind | 5 | 43200 | > th | dose independent | sin | 23 | NA |
| 163 | 105.66 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 164 | 105.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 166 | 105.68 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 14 |
| 174 | 105.73 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 192 | 105.83 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 201 | 105.90 | wind | 3 | 43200 | > th | dose dependent | sin | 23 | NA |
| 241 | 106.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 258 | 106.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 270 | 106.41 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 288 | 106.52 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 360 | 106.88 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 374 | 106.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 445 | 107.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 9 |
| 451 | 107.31 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 7 |
| 458 | 107.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 9 |
| 515 | 107.54 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 18 |
| 532 | 107.60 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 536 | 107.62 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 578 | 107.75 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 13 |
| 579 | 107.75 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 599 | 107.80 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 631 | 107.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 13 |
| 642 | 107.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 654 | 107.88 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 681 | 107.92 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 721 | 107.94 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 22 |
| 768 | 108.03 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 786 | 108.06 | temperature | 20 | 4320 | > th | dose dependent | sin | 3 | NA |
| 808 | 108.09 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 18 |
| 822 | 108.11 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 23 |
| 844 | 108.15 | temperature | 20 | 4320 | > th | dose dependent | sin | 18 | NA |
| 872 | 108.18 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 875 | 108.18 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 18 |
| 885 | 108.20 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 8 |
| 948 | 108.29 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 950 | 108.29 | radiation | 1 | 43200 | < th | dose dependent | sin | 12 | NA |
| 968 | 108.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 7 |
| 969 | 108.31 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 16 |
| 972 | 108.32 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 973 | 108.32 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 7 |
| 977 | 108.32 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 1 |