Os05g0131900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os05g0131900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.89 | 0.342 | 11 | -0.83 | 1.32 | 1.35 | 1.27 | -2.86 | 0.329 | 20.7 | 22.55 | 579 | -- | -- |
| 56.33 | 0.35 | 10.9 | -0.288 | 1.39 | 1.1 | 0.841 | -- | 0.464 | 20.6 | 21.25 | 575 | -- | -- |
| 56.98 | 0.352 | 11 | -0.618 | 1.34 | 1.25 | -- | -1.54 | 0.412 | 20.3 | 22.96 | 661 | -- | -- |
| 58.08 | 0.355 | 10.9 | -0.315 | 1.38 | 1.09 | -- | -- | 0.505 | 20.2 | 22.98 | 696 | -- | -- |
| 123.01 | 0.517 | 10.9 | -1.06 | -- | 2.35 | -- | -2.76 | 0.309 | -- | 24.03 | 634 | -- | -- |
| 79.67 | 0.418 | 10.9 | -0.0211 | 1.78 | -- | 1.01 | -- | 0.667 | 20.2 | -- | -- | -- | -- |
| 82.74 | 0.426 | 10.9 | -0.0494 | 1.78 | -- | -- | -- | 0.668 | 20.1 | -- | -- | -- | -- |
| 128.83 | 0.529 | 10.9 | -0.505 | -- | 2.13 | -- | -- | 0.429 | -- | 24.2 | 647 | -- | -- |
| 60.47 | 0.362 | 10.9 | -- | 1.41 | 1.01 | -- | -- | 0.546 | 20.2 | 23.23 | 696 | -- | -- |
| 257.29 | 0.75 | 10.8 | -0.064 | -- | -- | -- | -- | 0.647 | -- | -- | -- | -- | -- |
| 82.81 | 0.426 | 10.9 | -- | 1.78 | -- | -- | -- | 0.674 | 20.1 | -- | -- | -- | -- |
| 135.19 | 0.542 | 10.9 | -- | -- | 2.04 | -- | -- | 0.5 | -- | 24.3 | 639 | -- | -- |
| 257.4 | 0.749 | 10.8 | -- | -- | -- | -- | -- | 0.654 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.75 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 2 | 46.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 12 |
| 3 | 47.00 | temperature | 10 | 270 | > th | dose dependent | sin | 17 | NA |
| 4 | 47.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 23 | 48.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 44 | 48.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 9 |
| 50 | 48.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 13 |
| 61 | 49.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 15 |
| 72 | 49.44 | temperature | 10 | 720 | > th | dose dependent | sin | 22 | NA |
| 125 | 50.34 | temperature | 30 | 270 | < th | dose dependent | sin | 17 | NA |
| 151 | 50.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 181 | 51.20 | radiation | 1 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 196 | 51.37 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 7 |
| 210 | 51.51 | radiation | 1 | 270 | < th | dose independent | sin | 15 | NA |
| 224 | 51.68 | radiation | 1 | 270 | < th | dose dependent | sin | 15 | NA |
| 247 | 51.86 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 5 |
| 286 | 52.10 | radiation | 1 | 270 | > th | dose independent | sin | 15 | NA |
| 304 | 52.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 330 | 52.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 417 | 52.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 427 | 52.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 457 | 52.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 483 | 53.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 15 |
| 530 | 53.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 6 |
| 658 | 53.84 | humidity | 90 | 270 | < th | dose dependent | rect. | 14 | 5 |
| 685 | 53.97 | radiation | 1 | 270 | > th | dose independent | rect. | 14 | 5 |
| 735 | 54.08 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 23 |
| 741 | 54.09 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 9 |
| 795 | 54.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 7 |