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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0130400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF247, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0362) R2 : 0.00778
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.144 (0.0761) R2dN8 : 0.01 R2N8 : 0.00778
σ : 0.681
deviance : 212.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.96 0.649 3.12 -0.619 0.16 0.714 -1.47 1.67 -0.0987 5.83 92.53 1256 -- --
194.95 0.65 3.14 -0.433 0.163 0.879 -1.5 -- -0.0996 5.3 93.55 1109 -- --
196.21 0.652 3.12 -0.622 0.161 0.725 -- 1.65 -0.0909 5.34 92.58 1255 -- --
199.76 0.658 3.14 -0.429 0.128 0.867 -- -- -0.0943 4.37 93.56 955 -- --
197.43 0.654 3.12 -0.608 -- 0.735 -- 1.62 -0.0862 -- 92.66 1252 -- --
202.45 0.667 3.16 -0.397 0.159 -- -1.42 -- -0.198 5.43 -- -- -- --
207.34 0.674 3.16 -0.4 0.158 -- -- -- -0.191 6.5 -- -- -- --
200.86 0.66 3.14 -0.421 -- 0.867 -- -- -0.09 -- 93.51 946 -- --
203.76 0.665 3.13 -- 0.142 1.06 -- -- -0.0831 4.19 94.7 953 -- --
208.64 0.675 3.16 -0.396 -- -- -- -- -0.188 -- -- -- -- --
211.55 0.68 3.15 -- 0.153 -- -- -- -0.147 6.65 -- -- -- --
204.84 0.667 3.13 -- -- 1.03 -- -- -0.081 -- 94.69 933 -- --
212.77 0.681 3.15 -- -- -- -- -- -0.144 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 182.21 humidity 50.0 10 < th dose independent rect. 16 1
2 182.63 temperature 30.0 10 > th dose dependent rect. 16 1
3 182.78 temperature 30.0 10 > th dose independent rect. 16 1
4 182.83 humidity 50.0 10 < th dose dependent rect. 16 1
8 183.67 wind 5.0 10 < th dose independent rect. 16 1
11 184.54 radiation 10.0 10 > th dose independent rect. 16 1
12 185.09 atmosphere 1005.0 10 < th dose independent rect. 16 1
16 186.62 wind 7.0 10 < th dose dependent rect. 16 1
17 187.11 radiation 1.0 10 > th dose dependent rect. 16 1
21 188.12 humidity 90.0 90 > th dose dependent rect. 18 2
29 189.44 wind 1.0 14400 < th dose independent rect. 18 1
30 189.50 wind 3.0 10 > th dose independent rect. 16 1
31 189.69 humidity 90.0 720 > th dose dependent rect. 6 14
32 189.71 wind 1.0 14400 > th dose independent rect. 18 1
36 189.98 atmosphere 1010.0 10 < th dose dependent rect. 16 1
41 190.19 atmosphere 1000.0 10 > th dose independent rect. 16 1
43 190.25 radiation 20.0 10 < th dose independent rect. 16 1
46 190.31 precipitation 0.1 30 < th dose independent rect. 17 23
47 190.31 precipitation 0.1 30 < th dose dependent rect. 17 23
49 190.49 humidity 90.0 720 > th dose dependent rect. 7 1
54 190.70 wind 1.0 14400 < th dose dependent rect. 18 1
60 190.76 precipitation 0.1 30 > th dose independent rect. 19 5
65 190.80 precipitation 0.1 30 > th dose dependent rect. 19 5
72 190.84 humidity 90.0 4320 > th dose dependent rect. 6 13
82 190.87 precipitation 0.1 90 > th dose independent rect. 19 2
84 190.87 precipitation 0.1 10 > th dose independent rect. 19 3
86 190.87 precipitation 0.1 90 > th dose dependent rect. 19 2
88 190.87 precipitation 0.1 10 > th dose dependent rect. 19 3
119 190.96 temperature 10.0 10 > th dose independent rect. 16 1
123 190.96 radiation 40.0 10 < th dose independent rect. 16 1
124 190.96 precipitation 0.1 10 < th dose independent rect. 16 1
125 190.96 temperature 10.0 10 > th dose independent rect. 17 23
126 190.96 precipitation 0.1 10 < th dose dependent rect. 16 1
127 190.97 precipitation 0.1 10 > th dose independent rect. 19 1
137 190.97 precipitation 0.1 10 > th dose dependent rect. 19 1
153 191.08 wind 3.0 4320 > th dose dependent rect. 3 1
159 191.14 precipitation 0.1 4320 > th dose dependent rect. 5 7
160 191.15 precipitation 0.1 90 > th dose dependent rect. 18 10
164 191.22 wind 1.0 270 < th dose dependent sin 23 NA
165 191.23 humidity 90.0 4320 > th dose independent rect. 7 11
166 191.24 humidity 90.0 1440 < th dose independent rect. 12 1
173 191.31 humidity 90.0 1440 > th dose dependent rect. 12 1
174 191.32 humidity 90.0 1440 > th dose independent rect. 12 1
183 191.40 humidity 90.0 4320 > th dose dependent rect. 7 9
184 191.42 precipitation 0.1 4320 > th dose independent rect. 5 7
186 191.43 humidity 90.0 14400 > th dose dependent rect. 18 1
189 191.44 precipitation 0.1 4320 < th dose independent rect. 5 7
191 191.44 precipitation 0.1 4320 < th dose dependent rect. 5 7
192 191.44 humidity 90.0 30 > th dose dependent rect. 6 15
213 191.62 wind 1.0 270 < th dose dependent rect. 7 14
222 191.71 humidity 90.0 14400 > th dose independent rect. 18 1
224 191.71 precipitation 0.1 4320 > th dose dependent rect. 5 1
233 191.76 humidity 90.0 1440 > th dose dependent rect. 19 1
241 191.77 humidity 90.0 4320 < th dose independent rect. 7 11
242 191.77 precipitation 0.1 90 > th dose dependent rect. 18 14
245 191.78 humidity 90.0 1440 > th dose independent rect. 7 1
253 191.83 wind 1.0 720 < th dose dependent rect. 5 18
260 191.89 humidity 90.0 4320 < th dose independent rect. 7 9
265 191.90 humidity 50.0 30 < th dose dependent rect. 11 6
289 191.93 humidity 50.0 30 < th dose dependent rect. 13 4
294 191.99 humidity 90.0 1440 < th dose independent rect. 7 1
295 191.99 humidity 90.0 14400 > th dose independent rect. 15 4
311 192.06 precipitation 0.1 4320 > th dose independent rect. 5 1
315 192.08 precipitation 0.1 4320 < th dose independent rect. 5 1
316 192.08 precipitation 0.1 4320 < th dose dependent rect. 5 1
323 192.12 humidity 90.0 4320 > th dose dependent rect. 11 9
325 192.14 wind 9.0 14400 < th dose independent rect. 2 9
327 192.15 precipitation 0.1 4320 > th dose dependent rect. 5 4
329 192.16 wind 9.0 14400 > th dose independent rect. 3 8
350 192.21 humidity 90.0 4320 > th dose dependent rect. 13 7
352 192.22 wind 1.0 270 < th dose independent rect. 7 13
354 192.22 humidity 90.0 1440 > th dose dependent rect. 6 21
372 192.31 humidity 90.0 4320 < th dose independent rect. 9 6
402 192.39 wind 3.0 4320 > th dose dependent rect. 2 4
409 192.42 wind 9.0 14400 > th dose independent rect. 24 11
422 192.44 wind 5.0 14400 > th dose dependent rect. 5 1
433 192.46 atmosphere 995.0 10 > th dose dependent rect. 16 1
450 192.50 wind 1.0 720 < th dose independent rect. 5 18
460 192.54 precipitation 0.1 4320 > th dose independent rect. 5 4
461 192.54 wind 1.0 270 < th dose dependent rect. 7 9
472 192.57 humidity 50.0 1440 > th dose dependent rect. 7 1
476 192.58 humidity 90.0 4320 > th dose dependent sin 22 NA
482 192.59 humidity 90.0 720 > th dose dependent sin 23 NA
500 192.63 precipitation 0.1 4320 < th dose independent rect. 5 4
503 192.63 precipitation 0.1 4320 < th dose dependent rect. 5 4
509 192.64 wind 9.0 4320 < th dose independent rect. 22 13
515 192.65 precipitation 0.1 90 > th dose dependent rect. 14 6
524 192.67 humidity 90.0 4320 > th dose dependent rect. 6 6
529 192.68 humidity 90.0 1440 > th dose dependent rect. 2 22
530 192.69 humidity 90.0 4320 > th dose independent rect. 9 6
534 192.70 precipitation 0.1 4320 > th dose independent rect. 5 11
539 192.71 wind 1.0 720 > th dose independent rect. 5 14
545 192.72 humidity 90.0 14400 > th dose independent rect. 11 9
565 192.75 wind 1.0 270 < th dose dependent rect. 7 1
572 192.76 atmosphere 1005.0 43200 < th dose independent rect. 1 2
581 192.77 wind 9.0 14400 > th dose dependent rect. 3 8
585 192.78 precipitation 0.1 4320 < th dose independent rect. 5 11
587 192.78 precipitation 0.1 4320 < th dose dependent rect. 5 11
596 192.81 atmosphere 1005.0 43200 > th dose independent rect. 1 2
606 192.84 temperature 20.0 1440 > th dose independent rect. 12 3
628 192.88 humidity 90.0 14400 < th dose independent rect. 16 1
648 192.91 wind 1.0 720 < th dose independent rect. 6 8
650 192.91 precipitation 0.1 30 > th dose dependent rect. 4 16
655 192.92 humidity 90.0 4320 > th dose dependent rect. 9 6
666 192.95 wind 9.0 14400 > th dose dependent rect. 24 11
676 192.97 humidity 90.0 1440 > th dose dependent rect. 16 11
686 192.99 humidity 90.0 4320 < th dose independent rect. 10 4
699 193.02 precipitation 0.1 30 > th dose dependent sin 16 NA
702 193.03 humidity 90.0 4320 > th dose independent sin 23 NA
705 193.03 precipitation 0.1 30 > th dose dependent rect. 7 13
709 193.04 wind 9.0 10 < th dose independent rect. 17 23
714 193.05 temperature 20.0 1440 > th dose independent rect. 12 1
734 193.07 wind 5.0 4320 < th dose independent rect. 3 3
748 193.09 humidity 90.0 1440 > th dose dependent sin 16 NA
763 193.09 humidity 90.0 1440 > th dose dependent rect. 10 17
764 193.10 wind 1.0 270 < th dose independent sin 23 NA
772 193.11 precipitation 0.1 4320 < th dose independent rect. 18 1
776 193.11 precipitation 0.1 4320 < th dose dependent rect. 18 1
787 193.13 humidity 90.0 14400 < th dose independent rect. 15 3
821 193.17 humidity 60.0 4320 > th dose dependent rect. 14 1
836 193.19 precipitation 0.1 30 > th dose dependent rect. 7 17
849 193.21 temperature 20.0 1440 < th dose independent rect. 12 2
850 193.21 humidity 90.0 14400 < th dose independent rect. 14 6
853 193.21 humidity 70.0 720 < th dose independent rect. 18 17
863 193.21 wind 1.0 270 < th dose dependent rect. 2 19
864 193.22 precipitation 0.1 4320 > th dose independent rect. 18 1
881 193.24 humidity 70.0 720 < th dose independent sin 9 NA
882 193.24 wind 5.0 14400 > th dose independent rect. 5 1
886 193.24 humidity 90.0 1440 > th dose dependent rect. 10 22
908 193.25 humidity 90.0 1440 > th dose dependent rect. 12 20
941 193.28 humidity 90.0 1440 > th dose dependent rect. 16 16
948 193.29 temperature 20.0 1440 < th dose dependent rect. 12 1
977 193.31 humidity 90.0 14400 > th dose independent rect. 14 10
1000 193.34 humidity 90.0 14400 > th dose independent sin 21 NA