Os05g0128000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os05g0128000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.75 | 0.401 | 8.36 | 1.11 | 0.522 | -0.875 | 0.499 | 1.38 | 0.0355 | 8.55 | 21.6 | 3654 | -- | -- |
| 75.51 | 0.405 | 8.41 | 0.923 | 0.528 | -1.11 | 0.424 | -- | -0.0138 | 8.61 | 21.3 | 6502 | -- | -- |
| 73.48 | 0.399 | 8.36 | 1.12 | 0.532 | -0.876 | -- | 1.33 | 0.0388 | 8.57 | 21.52 | 3888 | -- | -- |
| 76 | 0.406 | 8.41 | 0.919 | 0.529 | -1.1 | -- | -- | -0.00967 | 8.75 | 21.31 | 6442 | -- | -- |
| 86.19 | 0.432 | 8.4 | 0.945 | -- | -0.968 | -- | 0.94 | -0.0184 | -- | 21.5 | 2178 | -- | -- |
| 101.9 | 0.473 | 8.49 | 0.171 | 0.556 | -- | 0.411 | -- | -0.392 | 8.83 | -- | -- | -- | -- |
| 102.45 | 0.474 | 8.49 | 0.185 | 0.554 | -- | -- | -- | -0.391 | 8.95 | -- | -- | -- | -- |
| 88.25 | 0.438 | 8.44 | 0.661 | -- | -1.02 | -- | -- | -0.0783 | -- | 21.5 | 2128 | -- | -- |
| 80.85 | 0.419 | 8.43 | -- | 0.523 | -0.74 | -- | -- | -0.145 | 8.66 | 22.3 | 1869 | -- | -- |
| 120.01 | 0.512 | 8.51 | 0.185 | -- | -- | -- | -- | -0.388 | -- | -- | -- | -- | -- |
| 103.36 | 0.476 | 8.5 | -- | 0.554 | -- | -- | -- | -0.412 | 8.92 | -- | -- | -- | -- |
| 89.62 | 0.441 | 8.46 | -- | -- | -0.794 | -- | -- | -0.169 | -- | 22.25 | 801 | -- | -- |
| 120.91 | 0.513 | 8.51 | -- | -- | -- | -- | -- | -0.408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 6 | 71.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 10 | 71.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 11 | 71.13 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 13 | 71.15 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 25 | 71.55 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 33 | 71.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 52 | 71.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 10 |
| 61 | 71.93 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 5 |
| 63 | 71.94 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 67 | 71.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 106 | 72.03 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 134 | 72.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 10 |
| 152 | 72.12 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 223 | 72.23 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 261 | 72.28 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 272 | 72.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 376 | 72.52 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 382 | 72.53 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 395 | 72.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 417 | 72.61 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 428 | 72.64 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 451 | 72.69 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 528 | 72.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 598 | 73.03 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 616 | 73.07 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 623 | 73.08 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 677 | 73.17 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 717 | 73.24 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 718 | 73.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 822 | 73.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 830 | 73.36 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 831 | 73.36 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 842 | 73.37 | temperature | 15 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 852 | 73.38 | temperature | 25 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 867 | 73.38 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 882 | 73.40 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 896 | 73.41 | temperature | 25 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 938 | 73.44 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 939 | 73.44 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 945 | 73.44 | temperature | 30 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 957 | 73.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 960 | 73.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 961 | 73.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 994 | 73.47 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 7 | 12 |