Os05g0127500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Leucoanthocyanidin dioxygenase-like protein.
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Os05g0127500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Leucoanthocyanidin dioxygenase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.93 | 0.646 | 10.8 | -0.909 | 0.71 | 1.03 | 5.36 | -3.94 | 0.631 | 8.36 | 9.997 | 721 | -- | -- |
| 211.38 | 0.677 | 10.8 | -0.62 | 0.8 | 1.11 | 5.35 | -- | 0.576 | 8.95 | 9.918 | 643 | -- | -- |
| 194.09 | 0.654 | 10.8 | -0.963 | 1.49 | 0.101 | -- | -3.23 | 0.492 | 7.01 | 9.997 | 721 | -- | -- |
| 251.45 | 0.739 | 10.8 | -0.741 | 0.779 | 1.02 | -- | -- | 0.624 | 8.33 | 9.99 | 630 | -- | -- |
| 285.77 | 0.787 | 10.9 | -1.08 | -- | 1.5 | -- | -2.9 | 0.396 | -- | 9.95 | 657 | -- | -- |
| 230.35 | 0.712 | 10.8 | -0.766 | 1.33 | -- | 3.72 | -- | 0.579 | 7.9 | -- | -- | -- | -- |
| 260.42 | 0.756 | 10.8 | -0.684 | 1.42 | -- | -- | -- | 0.565 | 6.76 | -- | -- | -- | -- |
| 265.2 | 0.758 | 10.8 | -0.776 | -- | 1.55 | -- | -- | 0.702 | -- | 9.737 | 817 | -- | -- |
| 260.9 | 0.752 | 10.8 | -- | 0.87 | 0.868 | -- | -- | 0.746 | 7.7 | 23.97 | 618 | -- | -- |
| 366.37 | 0.894 | 10.8 | -0.652 | -- | -- | -- | -- | 0.593 | -- | -- | -- | -- | -- |
| 272.74 | 0.773 | 10.8 | -- | 1.42 | -- | -- | -- | 0.641 | 6.79 | -- | -- | -- | -- |
| 273.88 | 0.771 | 10.8 | -- | -- | 1.59 | -- | -- | 0.857 | -- | 14.42 | 767 | -- | -- |
| 377.58 | 0.907 | 10.8 | -- | -- | -- | -- | -- | 0.666 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 174.57 | wind | 9.0 | 720 | < th | dose independent | sin | 3 | NA |
| 3 | 176.11 | wind | 9.0 | 270 | < th | dose independent | sin | 11 | NA |
| 6 | 177.68 | temperature | 10.0 | 30 | > th | dose dependent | sin | 6 | NA |
| 12 | 180.13 | wind | 9.0 | 720 | < th | dose independent | sin | 18 | NA |
| 19 | 180.43 | wind | 7.0 | 720 | < th | dose independent | rect. | 9 | 16 |
| 23 | 180.84 | wind | 9.0 | 270 | < th | dose independent | sin | 22 | NA |
| 33 | 181.63 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 7 |
| 34 | 181.84 | wind | 7.0 | 270 | < th | dose independent | rect. | 13 | 14 |
| 51 | 183.04 | wind | 7.0 | 720 | < th | dose independent | rect. | 11 | 15 |
| 56 | 183.25 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 65 | 183.45 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 66 | 183.55 | wind | 7.0 | 720 | < th | dose independent | rect. | 13 | 8 |
| 81 | 184.01 | wind | 7.0 | 720 | < th | dose independent | rect. | 3 | 16 |
| 83 | 184.04 | temperature | 30.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 97 | 184.47 | wind | 7.0 | 720 | < th | dose independent | rect. | 11 | 8 |
| 108 | 184.92 | radiation | 20.0 | 720 | < th | dose independent | rect. | 11 | 9 |
| 118 | 185.10 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 4 |
| 120 | 185.18 | radiation | 10.0 | 720 | < th | dose independent | sin | 21 | NA |
| 123 | 185.22 | temperature | 10.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 124 | 185.23 | wind | 9.0 | 30 | < th | dose independent | sin | 20 | NA |
| 135 | 185.34 | wind | 7.0 | 720 | < th | dose independent | rect. | 1 | 16 |
| 136 | 185.34 | radiation | 10.0 | 720 | < th | dose independent | rect. | 7 | 21 |
| 137 | 185.34 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 148 | 185.46 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 154 | 185.57 | radiation | 20.0 | 720 | < th | dose independent | rect. | 11 | 20 |
| 161 | 185.61 | radiation | 1.0 | 720 | < th | dose independent | rect. | 4 | 7 |
| 174 | 185.75 | radiation | 20.0 | 720 | < th | dose independent | rect. | 10 | 18 |
| 175 | 185.76 | radiation | 10.0 | 720 | < th | dose independent | rect. | 9 | 13 |
| 181 | 185.82 | radiation | 1.0 | 720 | < th | dose dependent | sin | 6 | NA |
| 193 | 185.94 | radiation | 10.0 | 10 | < th | dose independent | rect. | 17 | 21 |
| 210 | 186.09 | wind | 7.0 | 720 | < th | dose independent | rect. | 5 | 20 |
| 224 | 186.25 | wind | 9.0 | 30 | < th | dose independent | sin | 13 | NA |
| 229 | 186.28 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 259 | 186.47 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 21 | 7 |
| 307 | 186.81 | wind | 9.0 | 30 | < th | dose independent | sin | 9 | NA |
| 329 | 186.95 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 16 | 17 |
| 340 | 187.03 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 351 | 187.11 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 389 | 187.34 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 8 | 20 |
| 400 | 187.42 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 408 | 187.48 | wind | 7.0 | 720 | < th | dose independent | rect. | 9 | 12 |
| 446 | 187.64 | radiation | 10.0 | 90 | < th | dose independent | rect. | 6 | 22 |
| 455 | 187.69 | wind | 7.0 | 720 | < th | dose independent | rect. | 7 | 8 |
| 466 | 187.79 | radiation | 10.0 | 10 | < th | dose independent | rect. | 17 | 19 |
| 515 | 188.08 | atmosphere | 1015.0 | 720 | < th | dose independent | sin | 11 | NA |
| 534 | 188.19 | wind | 9.0 | 720 | < th | dose independent | rect. | 20 | 23 |
| 576 | 188.39 | radiation | 10.0 | 720 | < th | dose independent | rect. | 16 | 23 |
| 648 | 188.74 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 19 | 9 |
| 688 | 188.88 | radiation | 1.0 | 720 | < th | dose independent | rect. | 22 | 13 |
| 697 | 188.93 | radiation | 10.0 | 720 | < th | dose independent | no | NA | NA |
| 709 | 188.98 | temperature | 15.0 | 720 | > th | dose independent | rect. | 21 | 16 |
| 717 | 189.02 | wind | 9.0 | 720 | < th | dose independent | rect. | 18 | 23 |
| 747 | 189.13 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 23 | 8 |
| 762 | 189.18 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 786 | 189.28 | radiation | 1.0 | 720 | < th | dose independent | sin | 6 | NA |
| 805 | 189.36 | temperature | 15.0 | 720 | > th | dose independent | rect. | 1 | 8 |
| 822 | 189.42 | precipitation | 0.1 | 720 | < th | dose independent | sin | 10 | NA |
| 823 | 189.42 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 10 | NA |
| 871 | 189.60 | temperature | 15.0 | 720 | > th | dose independent | sin | 3 | NA |
| 879 | 189.63 | radiation | 10.0 | 10 | < th | dose independent | rect. | 17 | 15 |
| 890 | 189.67 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 892 | 189.69 | temperature | 15.0 | 90 | > th | dose independent | sin | 2 | NA |
| 897 | 189.70 | temperature | 15.0 | 90 | > th | dose independent | sin | 0 | NA |
| 903 | 189.71 | temperature | 15.0 | 720 | > th | dose independent | sin | 5 | NA |
| 905 | 189.71 | radiation | 10.0 | 10 | < th | dose independent | rect. | 12 | 22 |
| 912 | 189.74 | temperature | 15.0 | 90 | > th | dose independent | sin | 11 | NA |
| 941 | 189.85 | radiation | 10.0 | 90 | < th | dose independent | rect. | 12 | 22 |
| 943 | 189.87 | wind | 7.0 | 720 | < th | dose independent | rect. | 5 | 8 |
| 961 | 189.92 | wind | 9.0 | 720 | < th | dose independent | rect. | 22 | 23 |
| 984 | 190.02 | radiation | 10.0 | 10 | < th | dose independent | rect. | 9 | 23 |
| 989 | 190.04 | radiation | 10.0 | 10 | < th | dose independent | no | NA | NA |