Os05g0126800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mss4-like domain containing protein.
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Os05g0126800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mss4-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.46 | 0.567 | 7.49 | -1.53 | 1.39 | 1.37 | 0.605 | -4.67 | -0.0179 | 8.59 | 25.84 | 1241 | -- | -- |
| 152.8 | 0.576 | 7.35 | -0.485 | 1.49 | 1.04 | 1.08 | -- | 0.278 | 8.6 | 26.24 | 1183 | -- | -- |
| 146.59 | 0.564 | 7.49 | -1.55 | 1.4 | 1.39 | -- | -4.87 | -0.0319 | 8.53 | 25.8 | 1231 | -- | -- |
| 152.73 | 0.576 | 7.33 | -0.311 | 1.41 | 0.837 | -- | -- | 0.348 | 8.47 | 27.41 | 1243 | -- | -- |
| 249.97 | 0.736 | 7.53 | -1.57 | -- | 1.35 | -- | -4.82 | 0.0458 | -- | 26.47 | 1352 | -- | -- |
| 182.26 | 0.633 | 7.33 | -0.0901 | 1.33 | -- | 0.585 | -- | 0.311 | 8.16 | -- | -- | -- | -- |
| 183.26 | 0.634 | 7.33 | -0.0743 | 1.33 | -- | -- | -- | 0.31 | 8.09 | -- | -- | -- | -- |
| 252.66 | 0.74 | 7.37 | -0.329 | -- | 0.772 | -- | -- | 0.297 | -- | 26.5 | 1379 | -- | -- |
| 155.16 | 0.58 | 7.32 | -- | 1.37 | 0.784 | -- | -- | 0.38 | 8.46 | 27.72 | 1234 | -- | -- |
| 280.34 | 0.782 | 7.37 | -0.0624 | -- | -- | -- | -- | 0.327 | -- | -- | -- | -- | -- |
| 183.41 | 0.634 | 7.33 | -- | 1.33 | -- | -- | -- | 0.319 | 8.09 | -- | -- | -- | -- |
| 255.28 | 0.744 | 7.37 | -- | -- | 0.709 | -- | -- | 0.335 | -- | 26.6 | 1378 | -- | -- |
| 280.44 | 0.782 | 7.37 | -- | -- | -- | -- | -- | 0.333 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 2 | 144.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 8 | 144.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 20 | 144.89 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 33 | 145.38 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 36 | 145.53 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 48 | 145.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 17 |
| 51 | 145.75 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 64 | 145.91 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 94 | 146.22 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 106 | 146.30 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 122 | 146.40 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 126 | 146.41 | wind | 1 | 43200 | > th | dose dependent | sin | 2 | NA |
| 143 | 146.53 | wind | 3 | 43200 | > th | dose dependent | rect. | 8 | 8 |
| 151 | 146.59 | wind | 9 | 43200 | < th | dose dependent | sin | 2 | NA |
| 166 | 146.68 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 186 | 146.79 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 216 | 146.94 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 228 | 146.99 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 280 | 147.24 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 21 |
| 300 | 147.35 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 319 | 147.42 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 21 |
| 320 | 147.43 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 344 | 147.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 350 | 147.54 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 361 | 147.57 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 382 | 147.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 404 | 147.73 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 413 | 147.78 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 466 | 147.96 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 488 | 148.03 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 536 | 148.14 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 19 |
| 548 | 148.18 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 555 | 148.19 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 562 | 148.20 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 584 | 148.26 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 658 | 148.41 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 741 | 148.57 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 777 | 148.65 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 836 | 148.74 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 842 | 148.74 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 952 | 148.94 | wind | 3 | 43200 | > th | dose independent | sin | 3 | NA |
| 999 | 149.02 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |