Os05g0126400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0126400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.93 | 0.379 | 7.79 | 2.32 | 0.293 | -0.664 | -0.591 | 2.95 | 0.781 | 6.1 | 21.16 | 1599 | -- | -- |
| 71.64 | 0.394 | 7.9 | 1.45 | 0.358 | -0.512 | -0.636 | -- | 0.539 | 5.89 | 19.39 | 1236 | -- | -- |
| 65.53 | 0.377 | 7.79 | 2.37 | 0.271 | -0.687 | -- | 3.17 | 0.797 | 6.77 | 21.42 | 1703 | -- | -- |
| 72.12 | 0.396 | 7.9 | 1.46 | 0.338 | -0.696 | -- | -- | 0.546 | 5.93 | 14.31 | 1216 | -- | -- |
| 68.76 | 0.386 | 7.78 | 2.47 | -- | -0.764 | -- | 3.55 | 0.831 | -- | 21.81 | 1859 | -- | -- |
| 79.24 | 0.417 | 7.92 | 1.26 | 0.318 | -- | -0.605 | -- | 0.42 | 6.23 | -- | -- | -- | -- |
| 79.98 | 0.419 | 7.92 | 1.25 | 0.319 | -- | -- | -- | 0.423 | 6.84 | -- | -- | -- | -- |
| 76.23 | 0.407 | 7.9 | 1.5 | -- | -0.719 | -- | -- | 0.565 | -- | 12.08 | 1979 | -- | -- |
| 121.22 | 0.516 | 7.95 | -- | 0.319 | -0.143 | -- | -- | 0.3 | 7.05 | 12.75 | 907 | -- | -- |
| 85.29 | 0.432 | 7.93 | 1.26 | -- | -- | -- | -- | 0.429 | -- | -- | -- | -- | -- |
| 121.44 | 0.515 | 7.95 | -- | 0.334 | -- | -- | -- | 0.283 | 6.61 | -- | -- | -- | -- |
| 124.57 | 0.52 | 7.95 | -- | -- | -0.306 | -- | -- | 0.33 | -- | 22 | 417 | -- | -- |
| 127.25 | 0.527 | 7.96 | -- | -- | -- | -- | -- | 0.289 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.22 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 2 | 63.23 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 3 | 63.26 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 4 | 63.26 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 5 | 63.28 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 6 | 63.29 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 8 | 63.33 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 15 |
| 11 | 63.35 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 12 | 63.35 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 20 | 63.36 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 36 | 63.39 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 39 | 63.40 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 45 | 63.41 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 53 | 63.42 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 3 | NA |
| 55 | 63.42 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 60 | 63.42 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 63 | 63.43 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 66 | 63.43 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 74 | 63.44 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 3 | NA |
| 75 | 63.44 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 88 | 63.44 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 91 | 63.45 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 173 | 63.50 | atmosphere | 1010 | 43200 | < th | dose dependent | sin | 23 | NA |
| 177 | 63.50 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 6 | 11 |
| 198 | 63.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 224 | 63.52 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 272 | 63.53 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 302 | 63.54 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 424 | 63.56 | atmosphere | 1010 | 43200 | < th | dose dependent | no | NA | NA |
| 438 | 63.56 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 10 | 22 |
| 446 | 63.56 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 634 | 63.62 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 784 | 63.67 | atmosphere | 1005 | 43200 | > th | dose independent | no | NA | NA |
| 792 | 63.67 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 811 | 63.68 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 5 | 22 |
| 945 | 63.73 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 975 | 63.75 | atmosphere | 1005 | 43200 | < th | dose independent | no | NA | NA |
| 989 | 63.75 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 23 |