Os05g0125900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0125900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 243.44 | 0.733 | 2.94 | -0.00144 | 0.101 | 2.7 | 0.755 | -7.84 | -0.0145 | 11.3 | 94.96 | 295 | -- | -- |
| 263.11 | 0.755 | 2.94 | -0.0396 | 0.076 | 3.71 | 0.503 | -- | -0.0443 | 12.3 | 95.05 | 248 | -- | -- |
| 245.66 | 0.73 | 2.94 | 0.0163 | 0.105 | 2.79 | -- | -7.75 | -0.0181 | 11.2 | 94.97 | 286 | -- | -- |
| 264.31 | 0.757 | 2.95 | -0.0488 | 0.0988 | 3.59 | -- | -- | -0.0436 | 10.5 | 95.08 | 248 | -- | -- |
| 246.33 | 0.731 | 2.94 | 0.0142 | -- | 2.84 | -- | -7.63 | -0.0184 | -- | 94.97 | 286 | -- | -- |
| 300.79 | 0.813 | 2.96 | -0.0967 | 0.123 | -- | -1.09 | -- | -0.107 | 4.45 | -- | -- | -- | -- |
| 302.22 | 0.814 | 2.96 | -0.0857 | 0.216 | -- | -- | -- | -0.1 | 7.99 | -- | -- | -- | -- |
| 264.91 | 0.758 | 2.95 | -0.0523 | -- | 3.62 | -- | -- | -0.0443 | -- | 95.08 | 248 | -- | -- |
| 264.37 | 0.757 | 2.95 | -- | 0.0989 | 3.6 | -- | -- | -0.0384 | 10.5 | 95.07 | 248 | -- | -- |
| 304.76 | 0.816 | 2.96 | -0.0836 | -- | -- | -- | -- | -0.0976 | -- | -- | -- | -- | -- |
| 302.42 | 0.813 | 2.95 | -- | 0.215 | -- | -- | -- | -0.0908 | 8.02 | -- | -- | -- | -- |
| 264.97 | 0.758 | 2.95 | -- | -- | 3.63 | -- | -- | -0.038 | -- | 95.07 | 248 | -- | -- |
| 304.94 | 0.815 | 2.96 | -- | -- | -- | -- | -- | -0.0883 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 260.25 | wind | 1 | 270 | < th | dose independent | rect. | 3 | 1 |
| 2 | 262.93 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 3 | 262.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 4 | 266.85 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 13 | 268.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 15 | 269.56 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 20 | 270.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 21 | 270.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 23 | 270.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 32 | 270.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 40 | 271.80 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 2 | 7 |
| 48 | 272.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 49 | 272.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 87 | 274.19 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 118 | 275.07 | wind | 1 | 30 | < th | dose dependent | rect. | 2 | 7 |
| 129 | 275.66 | humidity | 80 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 141 | 275.92 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 149 | 276.07 | wind | 1 | 30 | < th | dose independent | rect. | 5 | 3 |
| 155 | 276.15 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 9 |
| 176 | 276.65 | wind | 1 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 180 | 276.83 | wind | 1 | 30 | < th | dose dependent | rect. | 2 | 11 |
| 187 | 277.02 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 191 | 277.05 | humidity | 90 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 192 | 277.05 | humidity | 90 | 270 | > th | dose dependent | rect. | 20 | 22 |
| 193 | 277.06 | humidity | 90 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 210 | 277.14 | humidity | 90 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 219 | 277.17 | humidity | 90 | 270 | > th | dose dependent | no | NA | NA |
| 251 | 277.36 | humidity | 90 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 284 | 277.58 | humidity | 90 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 319 | 278.00 | humidity | 90 | 270 | > th | dose dependent | sin | 6 | NA |
| 373 | 278.45 | humidity | 90 | 90 | > th | dose dependent | rect. | 5 | 20 |
| 443 | 278.86 | humidity | 90 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 446 | 278.88 | humidity | 90 | 90 | > th | dose dependent | rect. | 5 | 7 |
| 475 | 279.07 | humidity | 90 | 30 | > th | dose independent | rect. | 5 | 23 |
| 499 | 279.24 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 12 |
| 523 | 279.36 | humidity | 90 | 10 | < th | dose independent | rect. | 13 | 23 |
| 531 | 279.40 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 540 | 279.43 | wind | 1 | 30 | < th | dose independent | rect. | 3 | 10 |
| 571 | 279.63 | humidity | 90 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 643 | 279.80 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 20 | 1 |
| 661 | 279.88 | wind | 3 | 720 | < th | dose dependent | rect. | 23 | 3 |
| 670 | 279.94 | humidity | 90 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 768 | 280.36 | humidity | 90 | 30 | > th | dose dependent | sin | 23 | NA |
| 782 | 280.40 | wind | 1 | 720 | > th | dose independent | rect. | 23 | 6 |
| 826 | 280.57 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 828 | 280.57 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 830 | 280.57 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 881 | 280.57 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 883 | 280.57 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 885 | 280.57 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 947 | 280.61 | humidity | 90 | 10 | > th | dose independent | sin | 4 | NA |
| 952 | 280.64 | humidity | 90 | 30 | > th | dose independent | rect. | 18 | 18 |
| 973 | 280.69 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 2 |
| 980 | 280.70 | wind | 1 | 30 | < th | dose dependent | rect. | 5 | 1 |
| 985 | 280.71 | humidity | 90 | 10 | > th | dose independent | rect. | 2 | 22 |