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Os05g0125600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, Oryza sativa family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0223) R2 : 0.715
β1 : 0.691 (0.0816) R2dD : 0.0464 R2D : 0.0342
β2 : 1.92 (0.0582) R2dC : 0.681 R2C : 0.667
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.147 (0.0476) R2dN8 : 0.00797 R2N8 : -0.00631
σ : 0.419
deviance : 80.14
__
_____
C
peak time of C : 18
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.19 0.382 10.4 0.852 1.91 -0.76 0.763 -0.00707 0.334 18.1 10.02 2837 -- --
66.16 0.379 10.4 0.85 1.91 -0.76 0.773 -- 0.332 18.2 10.01 2818 -- --
67.6 0.383 10.4 0.845 1.91 -0.772 -- 0.00738 0.333 18.1 10.01 2825 -- --
67.6 0.383 10.4 0.846 1.91 -0.763 -- -- 0.334 18.1 10.02 2822 -- --
256.82 0.746 10.4 0.898 -- -0.789 -- -0.0449 0.324 -- 10 2887 -- --
78.6 0.416 10.4 0.697 1.91 -- 0.8 -- 0.144 18 -- -- -- --
80.14 0.419 10.4 0.691 1.92 -- -- -- 0.147 18 -- -- -- --
256.11 0.745 10.4 0.793 -- -0.555 -- -- 0.306 -- 22.05 1413 -- --
81.62 0.421 10.4 -- 1.95 -0.661 -- -- 0.113 18.1 27.81 3452 -- --
270.59 0.769 10.4 0.634 -- -- -- -- 0.103 -- -- -- -- --
92.72 0.45 10.4 -- 1.91 -- -- -- 0.0699 18 -- -- -- --
270.01 0.765 10.4 -- -- -0.591 -- -- 0.133 -- 51.87 7126 -- --
281.2 0.783 10.4 -- -- -- -- -- 0.0326 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.67 wind 5.0 270 < th dose independent rect. 3 2
2 55.09 wind 5.0 270 < th dose independent rect. 2 4
3 55.51 wind 9.0 270 < th dose dependent rect. 3 2
5 55.62 precipitation 0.1 270 < th dose independent rect. 3 2
6 55.62 precipitation 0.1 270 < th dose dependent rect. 3 2
7 55.95 wind 7.0 270 < th dose dependent rect. 2 4
14 56.47 wind 9.0 270 < th dose independent rect. 5 22
17 56.49 temperature 10.0 270 > th dose independent rect. 3 2
19 56.49 temperature 30.0 270 < th dose independent rect. 3 2
20 56.49 humidity 50.0 270 > th dose independent rect. 3 2
23 56.49 atmosphere 995.0 270 > th dose independent rect. 3 2
24 56.49 atmosphere 1010.0 270 < th dose independent rect. 3 2
26 56.49 radiation 20.0 270 < th dose independent rect. 3 2
29 56.49 temperature 10.0 270 > th dose independent rect. 5 22
31 56.51 radiation 40.0 270 < th dose dependent rect. 3 2
33 56.54 radiation 1.0 270 < th dose dependent rect. 3 2
38 56.59 radiation 1.0 270 < th dose independent rect. 3 2
40 56.63 precipitation 0.1 270 < th dose independent rect. 2 4
41 56.63 precipitation 0.1 270 < th dose dependent rect. 2 4
56 57.05 atmosphere 1010.0 270 < th dose independent rect. 2 4
60 57.20 wind 9.0 270 < th dose independent rect. 6 20
66 57.31 temperature 10.0 270 > th dose independent rect. 2 4
68 57.31 temperature 30.0 270 < th dose independent rect. 2 4
69 57.31 humidity 50.0 270 > th dose independent rect. 2 4
72 57.31 atmosphere 995.0 270 > th dose independent rect. 2 4
74 57.31 radiation 20.0 270 < th dose independent rect. 2 4
77 57.31 temperature 10.0 270 > th dose independent rect. 6 20
84 57.48 radiation 40.0 270 < th dose dependent rect. 2 4
86 57.50 temperature 10.0 270 > th dose dependent rect. 3 3
97 57.62 temperature 10.0 30 > th dose independent rect. 4 4
99 57.62 temperature 30.0 30 < th dose independent rect. 4 4
100 57.62 humidity 50.0 30 > th dose independent rect. 4 4
102 57.62 atmosphere 995.0 30 > th dose independent rect. 4 4
103 57.62 atmosphere 1015.0 30 < th dose independent rect. 4 4
104 57.62 temperature 10.0 30 > th dose independent rect. 8 20
111 57.70 humidity 50.0 270 > th dose dependent rect. 3 2
121 57.73 precipitation 0.1 270 < th dose independent rect. 6 20
122 57.73 precipitation 0.1 270 < th dose dependent rect. 6 20
123 57.75 radiation 40.0 30 < th dose independent rect. 4 4
126 57.80 precipitation 0.1 270 < th dose independent rect. 5 22
127 57.80 precipitation 0.1 270 < th dose dependent rect. 5 22
132 57.83 wind 9.0 30 < th dose independent rect. 8 20
182 58.21 precipitation 0.1 90 < th dose independent rect. 8 19
184 58.21 precipitation 0.1 90 < th dose dependent rect. 8 19
223 58.42 temperature 10.0 30 > th dose dependent rect. 4 4
224 58.45 atmosphere 1010.0 270 < th dose independent rect. 10 21
225 58.46 atmosphere 1010.0 270 < th dose independent rect. 11 19
234 58.51 atmosphere 995.0 30 > th dose independent rect. 8 20
251 58.56 atmosphere 1010.0 270 < th dose independent rect. 11 10
268 58.79 humidity 50.0 270 > th dose dependent rect. 2 4
273 58.84 atmosphere 995.0 30 > th dose dependent rect. 8 20
300 58.99 atmosphere 1015.0 270 < th dose dependent rect. 3 2
312 59.07 atmosphere 995.0 270 > th dose independent rect. 6 20
313 59.07 humidity 50.0 90 > th dose dependent rect. 4 4
321 59.12 temperature 15.0 270 > th dose independent rect. 10 21
322 59.13 temperature 15.0 270 > th dose independent rect. 12 18
431 59.73 atmosphere 1015.0 30 < th dose dependent rect. 4 4
459 59.94 precipitation 0.1 270 < th dose independent rect. 2 14
460 59.94 precipitation 0.1 270 < th dose dependent rect. 2 14
475 60.05 temperature 15.0 270 > th dose independent rect. 11 10
487 60.17 wind 1.0 270 > th dose independent rect. 3 1
548 60.46 radiation 40.0 270 < th dose dependent rect. 15 11
550 60.47 temperature 15.0 10 > th dose independent rect. 14 18
569 60.54 wind 9.0 270 < th dose independent rect. 16 10
600 60.63 temperature 30.0 270 < th dose dependent rect. 3 2
615 60.72 precipitation 0.1 270 < th dose independent rect. 16 10
616 60.72 precipitation 0.1 270 < th dose dependent rect. 16 10
619 60.74 radiation 1.0 10 < th dose dependent sin 12 NA
628 60.81 wind 9.0 270 < th dose independent rect. 7 3
629 60.81 temperature 10.0 270 > th dose independent rect. 7 3
630 60.81 atmosphere 995.0 270 > th dose independent rect. 7 3
631 60.81 atmosphere 1015.0 270 < th dose independent rect. 7 3
637 60.84 humidity 50.0 270 > th dose independent rect. 7 3
638 60.84 precipitation 0.1 270 < th dose independent rect. 7 3
639 60.84 radiation 30.0 270 < th dose independent rect. 16 10
640 60.84 precipitation 0.1 270 < th dose dependent rect. 7 3
643 60.85 temperature 10.0 270 > th dose independent rect. 16 10
645 60.85 temperature 10.0 270 > th dose independent rect. 2 14
646 60.85 atmosphere 1015.0 270 < th dose independent rect. 2 14
652 60.86 atmosphere 995.0 270 > th dose dependent rect. 3 2
673 60.95 temperature 15.0 10 > th dose independent rect. 12 20
674 60.96 humidity 50.0 30 > th dose independent rect. 8 20
676 60.97 atmosphere 995.0 10 > th dose dependent rect. 4 4
704 61.10 wind 9.0 270 < th dose independent rect. 2 14
713 61.16 precipitation 0.1 270 < th dose independent rect. 10 21
717 61.16 precipitation 0.1 270 < th dose dependent rect. 10 21
743 61.27 wind 9.0 1440 < th dose independent rect. 5 4
744 61.27 temperature 10.0 1440 > th dose independent rect. 5 4
747 61.27 humidity 50.0 1440 > th dose independent rect. 5 4
749 61.27 atmosphere 995.0 1440 > th dose independent rect. 5 4
750 61.27 atmosphere 1015.0 1440 < th dose independent rect. 5 4
751 61.27 temperature 10.0 1440 > th dose independent rect. 9 20
754 61.28 temperature 10.0 270 > th dose independent rect. 6 6
755 61.28 atmosphere 995.0 270 > th dose independent rect. 6 6
756 61.28 atmosphere 1015.0 270 < th dose independent rect. 6 6
761 61.30 precipitation 0.1 270 < th dose independent rect. 6 6
763 61.30 precipitation 0.1 270 < th dose dependent rect. 6 6
767 61.32 temperature 10.0 270 > th dose independent rect. 21 14
768 61.32 atmosphere 995.0 270 > th dose independent rect. 21 14
773 61.34 atmosphere 995.0 270 > th dose independent rect. 17 9
775 61.35 radiation 1.0 10 < th dose independent sin 12 NA
781 61.37 wind 9.0 270 < th dose independent rect. 6 6
787 61.39 wind 9.0 270 < th dose independent rect. 10 21
799 61.45 radiation 1.0 10 > th dose independent rect. 5 3
817 61.46 wind 9.0 270 < th dose independent rect. 21 14
818 61.46 precipitation 0.1 270 < th dose independent rect. 12 18
820 61.46 precipitation 0.1 270 < th dose dependent rect. 12 18
832 61.51 humidity 50.0 270 > th dose independent rect. 21 14
841 61.54 radiation 1.0 270 > th dose independent rect. 7 3
854 61.59 humidity 50.0 270 > th dose independent rect. 6 5
858 61.59 humidity 50.0 270 > th dose independent rect. 17 9
862 61.61 humidity 50.0 270 > th dose independent rect. 6 20
895 61.71 temperature 30.0 270 < th dose independent rect. 7 3
897 61.71 wind 9.0 270 < th dose independent rect. 12 18
901 61.73 atmosphere 995.0 270 > th dose independent rect. 2 14
938 61.80 radiation 1.0 10 > th dose independent rect. 12 20
947 61.83 wind 1.0 270 > th dose independent rect. 7 3
952 61.85 radiation 40.0 90 < th dose independent rect. 13 19
953 61.85 atmosphere 1015.0 30 < th dose independent rect. 8 20
1000 61.94 wind 9.0 270 < th dose dependent rect. 7 3