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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0125400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor protein kinase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.046) R2 : 0.00432
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.136 (0.0969) R2dN8 : 0.00558 R2N8 : 0.00432
σ : 0.867
deviance : 344.82
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
324.76 0.847 3.17 -0.366 0.172 2.22 0.733 -6.05 -0.0188 17.6 0.4589 4474 -- --
330.5 0.847 3.02 -0.113 0.213 0.905 0.974 -- 0.0222 17.1 0.349 5338 -- --
323.63 0.838 3.18 -0.457 0.234 2.35 -- -6.45 -0.0522 16.3 0.8424 4202 -- --
321.92 0.836 3.04 0.0286 0.182 1.67 -- -- -0.0491 16.1 1.512 3242 -- --
323.93 0.838 3.3 -0.895 -- 3.34 -- -10.7 -0.074 -- 0.7083 4121 -- --
340.11 0.865 3.06 0.256 0.177 -- 0.76 -- -0.108 17.8 -- -- -- --
341.18 0.865 3.06 0.253 0.195 -- -- -- -0.104 16.3 -- -- -- --
323.7 0.838 3.04 0.024 -- 1.65 -- -- -0.0557 -- 1.5 3240 -- --
321.89 0.836 3.04 -- 0.181 1.65 -- -- -0.0531 15.6 1.494 3201 -- --
343.23 0.866 3.05 0.245 -- -- -- -- -0.109 -- -- -- -- --
342.86 0.866 3.06 -- 0.191 -- -- -- -0.132 16.4 -- -- -- --
323.71 0.838 3.04 -- -- 1.66 -- -- -0.058 -- 1.5 3235 -- --
344.82 0.867 3.06 -- -- -- -- -- -0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 312.77 temperature 30.0 90 < th dose independent rect. 12 2
7 314.96 humidity 80.0 90 < th dose independent rect. 2 2
8 314.97 humidity 80.0 90 < th dose dependent rect. 2 2
9 314.99 humidity 90.0 10 < th dose dependent rect. 3 1
17 315.64 humidity 90.0 10 < th dose independent rect. 3 1
23 316.38 temperature 30.0 90 < th dose dependent rect. 12 1
32 317.57 humidity 90.0 30 < th dose independent rect. 12 2
35 317.73 atmosphere 995.0 30 > th dose independent rect. 14 22
36 317.75 radiation 20.0 10 > th dose independent rect. 13 1
38 318.06 humidity 70.0 10 < th dose independent rect. 12 2
52 318.97 precipitation 0.1 4320 > th dose dependent rect. 17 2
60 319.49 radiation 1.0 10 > th dose dependent rect. 13 1
61 319.55 wind 1.0 10 < th dose independent rect. 13 1
63 319.55 wind 1.0 10 < th dose dependent rect. 13 1
67 319.71 wind 5.0 90 > th dose dependent rect. 12 2
70 319.87 wind 5.0 90 > th dose independent rect. 12 2
95 320.92 precipitation 0.1 4320 > th dose dependent rect. 10 8
104 321.09 temperature 10.0 1440 > th dose independent rect. 13 2
109 321.09 temperature 10.0 1440 > th dose independent rect. 15 22
112 321.16 precipitation 0.1 90 < th dose independent rect. 12 2
113 321.16 precipitation 0.1 90 < th dose dependent rect. 12 2
114 321.24 atmosphere 1010.0 30 < th dose independent rect. 12 2
119 321.27 temperature 20.0 30 > th dose independent rect. 14 22
125 321.39 temperature 10.0 30 > th dose independent rect. 12 2
127 321.39 atmosphere 995.0 30 > th dose independent rect. 12 2
129 321.39 temperature 10.0 30 > th dose independent rect. 14 22
136 321.47 wind 9.0 30 < th dose independent rect. 12 2
137 321.49 precipitation 0.1 4320 > th dose independent rect. 17 2
138 321.53 humidity 60.0 90 > th dose independent rect. 12 2
140 321.60 precipitation 0.1 4320 < th dose independent rect. 17 2
141 321.60 precipitation 0.1 4320 < th dose dependent rect. 17 2
144 321.66 atmosphere 1005.0 30 > th dose dependent rect. 3 1
145 321.73 wind 9.0 30 < th dose independent rect. 14 22
163 321.98 wind 9.0 30 < th dose dependent rect. 12 2
164 321.99 wind 5.0 10 > th dose independent rect. 13 1
169 322.05 precipitation 0.1 4320 > th dose dependent rect. 20 22
214 322.41 precipitation 0.1 90 < th dose independent rect. 14 22
217 322.41 precipitation 0.1 90 < th dose dependent rect. 14 22
228 322.53 temperature 20.0 30 < th dose independent rect. 2 2
256 322.93 atmosphere 1000.0 720 < th dose dependent rect. 10 3
276 323.32 atmosphere 995.0 10 > th dose dependent rect. 13 1
281 323.39 wind 1.0 90 < th dose dependent rect. 20 1
293 323.51 temperature 10.0 30 > th dose dependent rect. 14 22
294 323.52 precipitation 0.1 4320 > th dose dependent rect. 17 7
308 323.73 precipitation 0.1 4320 > th dose dependent rect. 17 10
317 323.88 radiation 40.0 90 < th dose independent rect. 12 1
318 323.88 humidity 90.0 10 < th dose dependent rect. 12 2
322 323.90 wind 5.0 10 < th dose dependent rect. 14 1
328 324.00 atmosphere 1000.0 90 < th dose dependent rect. 16 1
337 324.14 precipitation 0.1 4320 > th dose dependent rect. 2 16
362 324.30 wind 1.0 10 < th dose dependent rect. 13 5
379 324.42 atmosphere 1000.0 90 < th dose dependent rect. 13 1
391 324.47 wind 5.0 4320 > th dose dependent rect. 20 5
392 324.48 wind 5.0 4320 > th dose independent rect. 20 1
407 324.59 atmosphere 1000.0 90 < th dose independent rect. 13 1
419 324.76 wind 1.0 720 > th dose dependent rect. 2 1
432 324.90 wind 7.0 4320 > th dose dependent rect. 17 8
438 324.94 atmosphere 995.0 90 > th dose independent rect. 14 11
440 324.95 wind 7.0 4320 < th dose independent rect. 20 5
445 325.02 wind 5.0 4320 < th dose independent rect. 20 1
452 325.03 wind 9.0 4320 < th dose independent rect. 16 10
454 325.04 wind 7.0 4320 > th dose independent rect. 20 5
474 325.14 wind 9.0 4320 < th dose independent rect. 16 6
507 325.30 atmosphere 1000.0 90 < th dose independent rect. 16 2
511 325.31 wind 5.0 10 > th dose dependent rect. 13 1
519 325.38 atmosphere 1000.0 720 < th dose independent rect. 10 1
540 325.44 atmosphere 1015.0 30 < th dose dependent rect. 12 2
554 325.52 wind 1.0 90 < th dose dependent rect. 16 5
573 325.59 wind 7.0 30 < th dose independent rect. 12 16
577 325.60 wind 9.0 4320 > th dose independent rect. 16 8
594 325.64 wind 9.0 90 < th dose dependent rect. 14 22
595 325.65 temperature 20.0 90 < th dose dependent rect. 11 11
601 325.67 atmosphere 1005.0 43200 < th dose independent rect. 4 2
617 325.70 atmosphere 1005.0 43200 > th dose independent rect. 5 1
645 325.81 temperature 25.0 30 < th dose dependent rect. 2 21
664 325.85 atmosphere 1000.0 720 < th dose independent rect. 10 3
706 326.02 precipitation 0.1 4320 < th dose independent rect. 17 6
707 326.02 wind 5.0 4320 > th dose dependent rect. 20 1
708 326.02 precipitation 0.1 4320 < th dose dependent rect. 17 6
711 326.03 precipitation 0.1 4320 > th dose independent rect. 17 6
722 326.05 temperature 20.0 90 < th dose dependent rect. 19 2
745 326.12 atmosphere 1000.0 4320 < th dose independent rect. 10 1
749 326.13 atmosphere 1000.0 4320 > th dose independent rect. 10 1
750 326.13 atmosphere 1000.0 4320 > th dose independent rect. 10 3
753 326.14 atmosphere 1000.0 4320 < th dose independent rect. 10 3
785 326.19 atmosphere 1000.0 4320 > th dose independent rect. 12 1
812 326.22 temperature 10.0 30 > th dose dependent rect. 12 2
829 326.26 atmosphere 1000.0 4320 < th dose independent rect. 12 1
834 326.27 atmosphere 1015.0 30 < th dose independent rect. 14 22
894 326.33 wind 9.0 4320 > th dose dependent rect. 16 2
917 326.40 wind 1.0 90 > th dose independent rect. 12 2
948 326.52 atmosphere 1005.0 4320 < th dose independent rect. 21 1
953 326.54 wind 1.0 90 < th dose independent rect. 8 14
962 326.57 precipitation 0.1 4320 < th dose independent rect. 17 10
963 326.57 precipitation 0.1 30 < th dose independent rect. 12 16
964 326.57 temperature 20.0 30 < th dose independent rect. 2 21
967 326.57 precipitation 0.1 4320 < th dose dependent rect. 17 10
968 326.57 precipitation 0.1 30 < th dose dependent rect. 12 16
981 326.62 wind 7.0 4320 < th dose independent rect. 19 3
983 326.62 wind 1.0 90 < th dose independent rect. 13 9
999 326.66 temperature 10.0 30 > th dose independent rect. 4 8