Os05g0124700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Deoxynucleoside kinase family protein.
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Os05g0124700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Deoxynucleoside kinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.88 | 0.432 | 2.94 | -0.0779 | 0.0785 | -0.446 | -0.117 | 0.566 | 0.0263 | 10.8 | 1 | 10 | -- | -- |
| 86.08 | 0.435 | 2.94 | -0.0403 | 0.0863 | -0.377 | -0.148 | -- | 0.0215 | 8.87 | 1 | 10 | -- | -- |
| 85.93 | 0.432 | 2.94 | -0.0779 | 0.0785 | -0.446 | -- | 0.566 | 0.0263 | 10.8 | 1 | 10 | -- | -- |
| 85.65 | 0.434 | 2.94 | -0.0378 | 0.0856 | -0.425 | -- | -- | 0.0186 | 9.65 | 0.8955 | 8 | -- | -- |
| 86.32 | 0.433 | 2.94 | -0.0825 | -- | -0.436 | -- | 0.545 | 0.0256 | -- | 1.011 | 10 | -- | -- |
| 90 | 0.445 | 2.93 | -0.0115 | 0.123 | -- | -0.269 | -- | 0.0262 | 6.9 | -- | -- | -- | -- |
| 90.18 | 0.445 | 2.93 | -0.0163 | 0.122 | -- | -- | -- | 0.0269 | 6.9 | -- | -- | -- | -- |
| 86.09 | 0.434 | 2.94 | -0.0385 | -- | -0.425 | -- | -- | 0.0187 | -- | 0.8358 | 8 | -- | -- |
| 85.69 | 0.433 | 2.94 | -- | 0.0857 | -0.423 | -- | -- | 0.0228 | 9.67 | 0.8955 | 8 | -- | -- |
| 90.97 | 0.446 | 2.94 | -0.0137 | -- | -- | -- | -- | 0.0292 | -- | -- | -- | -- | -- |
| 90.19 | 0.444 | 2.93 | -- | 0.122 | -- | -- | -- | 0.0287 | 6.9 | -- | -- | -- | -- |
| 86.13 | 0.434 | 2.94 | -- | -- | -0.422 | -- | -- | 0.0231 | -- | 0.8358 | 8 | -- | -- |
| 90.97 | 0.445 | 2.94 | -- | -- | -- | -- | -- | 0.0307 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.21 | wind | 1 | 10 | < th | dose independent | rect. | 13 | 1 |
| 9 | 78.21 | wind | 1 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 21 | 78.25 | wind | 1 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 23 | 78.26 | wind | 1 | 90 | < th | dose independent | rect. | 12 | 1 |
| 111 | 78.71 | wind | 1 | 30 | < th | dose dependent | rect. | 10 | 5 |
| 173 | 79.21 | wind | 1 | 30 | < th | dose independent | rect. | 10 | 5 |
| 272 | 80.47 | wind | 1 | 10 | < th | dose independent | sin | 18 | NA |
| 295 | 81.11 | wind | 1 | 10 | < th | dose independent | sin | 22 | NA |
| 297 | 81.13 | wind | 1 | 30 | < th | dose dependent | sin | 22 | NA |
| 321 | 81.37 | wind | 1 | 10 | > th | dose independent | sin | 18 | NA |
| 404 | 82.27 | wind | 1 | 30 | < th | dose dependent | rect. | 13 | 14 |
| 406 | 82.31 | wind | 1 | 30 | < th | dose dependent | rect. | 10 | 17 |
| 424 | 82.55 | wind | 1 | 10 | < th | dose independent | rect. | 13 | 14 |
| 426 | 82.62 | wind | 1 | 10 | > th | dose independent | sin | 22 | NA |
| 498 | 83.70 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 21 |
| 553 | 84.45 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 23 |
| 631 | 85.07 | wind | 1 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 646 | 85.13 | wind | 1 | 10 | < th | dose independent | rect. | 1 | 14 |
| 660 | 85.14 | wind | 1 | 30 | < th | dose independent | rect. | 24 | 3 |
| 685 | 85.27 | wind | 1 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 695 | 85.33 | wind | 1 | 30 | < th | dose dependent | rect. | 24 | 3 |
| 706 | 85.38 | wind | 1 | 10 | > th | dose independent | rect. | 11 | 23 |
| 717 | 85.43 | wind | 1 | 10 | < th | dose independent | rect. | 21 | 6 |
| 798 | 85.72 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 2 |
| 814 | 85.75 | wind | 1 | 10 | > th | dose independent | rect. | 3 | 23 |
| 844 | 85.85 | wind | 1 | 10 | < th | dose independent | rect. | 4 | 23 |
| 853 | 85.88 | wind | 1 | 10 | > th | dose independent | no | NA | NA |
| 890 | 85.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 912 | 85.97 | wind | 1 | 10 | < th | dose independent | no | NA | NA |
| 946 | 86.00 | humidity | 90 | 10 | > th | dose independent | rect. | 2 | 1 |
| 950 | 86.01 | temperature | 20 | 10 | > th | dose independent | rect. | 2 | 1 |
| 953 | 86.02 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 2 | 1 |
| 995 | 86.08 | humidity | 50 | 30 | > th | dose dependent | rect. | 2 | 1 |