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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0124000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ankyrin repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.56 (0.0657) R2 : 0.377
β1 : 1.69 (0.241) R2dD : 0.0699 R2D : -0.0794
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.54 (1.04) R2dE : 0.0387 R2E : -0.0607
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.14 (0.14) R2dN8 : 0.426 R2N8 : 0.264
σ : 1.23
deviance : 697.37
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1002
memory length : 51
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.02
open length of G : 1.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
676.8 1.22 3.54 1.8 0.423 0.699 -1.35 26.3 2.12 6.57 1005 93 1.99 0.683
685.43 1.22 3.55 1.68 0.434 5.47 -1.18 -- 2.14 6.85 1002 123 3.56 0.4
680.66 1.22 3.54 1.77 0.423 0.565 -- 26.7 2.13 6.1 1004 97 2 0.608
687.75 1.22 3.56 1.68 0.432 5.31 -- -- 2.13 5.99 1002 51 4.02 1.02
689.82 1.22 3.55 1.79 -- 0.814 -- 27.2 2.13 -- 1004 98 1.98 0.583
726.34 1.26 3.56 1.74 0.502 -- -0.741 -- 2.11 6.22 -- -- -- --
727.4 1.26 3.56 1.72 0.504 -- -- -- 2.11 5.69 -- -- -- --
697.37 1.23 3.56 1.69 -- 5.54 -- -- 2.14 -- 1002 51 4.02 1.02
762.04 1.29 3.6 -- 0.454 5.61 -- -- 1.95 5.75 1002 55 4.01 0.981
740.57 1.27 3.57 1.74 -- -- -- -- 2.12 -- -- -- -- --
805.79 1.33 3.6 -- 0.532 -- -- -- 1.92 5.54 -- -- -- --
772.68 1.3 3.61 -- -- 5.83 -- -- 1.96 -- 1002 55 3.95 0.643
820.49 1.34 3.61 -- -- -- -- -- 1.93 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 678.40 atmosphere 1005 90 < th dose dependent rect. 2 1
2 678.89 atmosphere 1005 10 < th dose dependent rect. 2 2
14 684.81 atmosphere 1000 10 < th dose independent rect. 2 3
15 684.82 atmosphere 1000 90 < th dose independent rect. 2 1
47 688.92 atmosphere 1005 90 < th dose dependent rect. 20 8
57 690.62 atmosphere 1005 90 < th dose dependent rect. 23 5
58 691.06 atmosphere 1005 270 < th dose dependent rect. 24 1
59 691.31 atmosphere 1010 30 < th dose dependent rect. 17 12
69 692.22 atmosphere 1005 10 < th dose dependent rect. 24 5
80 692.86 temperature 20 270 < th dose independent rect. 22 8
95 693.49 temperature 25 90 > th dose dependent rect. 2 5
96 693.65 atmosphere 1005 90 < th dose independent rect. 11 17
104 694.26 temperature 20 270 < th dose independent rect. 22 20
120 694.67 temperature 20 270 > th dose independent sin 8 NA
160 695.74 atmosphere 1005 30 > th dose independent rect. 22 23
169 695.95 atmosphere 1010 10 < th dose dependent sin 8 NA
172 695.96 atmosphere 1010 90 < th dose dependent sin 9 NA
177 696.06 temperature 30 90 < th dose dependent rect. 23 12
184 696.23 temperature 30 90 < th dose dependent rect. 23 17
200 696.52 temperature 20 90 > th dose dependent rect. 2 7
203 696.56 atmosphere 1005 90 < th dose independent rect. 17 11
208 696.64 temperature 20 720 > th dose dependent rect. 21 8
212 696.73 temperature 20 270 > th dose independent rect. 23 12
220 696.89 temperature 20 270 > th dose dependent rect. 24 8
234 697.03 temperature 20 270 < th dose independent sin 9 NA
249 697.30 temperature 25 720 > th dose independent rect. 20 12
250 697.31 temperature 20 270 > th dose independent rect. 23 10
272 697.59 atmosphere 1000 30 > th dose dependent rect. 22 23
286 697.79 temperature 25 270 < th dose dependent sin 6 NA
290 697.85 atmosphere 1005 10 > th dose independent rect. 5 23
299 697.92 temperature 30 90 < th dose dependent rect. 22 22
305 697.99 temperature 25 270 > th dose independent rect. 1 7
323 698.19 atmosphere 1000 10 < th dose independent rect. 20 9
334 698.29 temperature 25 90 > th dose independent rect. 3 1
337 698.33 atmosphere 1015 720 < th dose dependent rect. 17 1
360 698.59 atmosphere 1000 270 > th dose dependent rect. 22 10
363 698.64 atmosphere 1005 90 < th dose independent rect. 15 13
369 698.68 temperature 20 270 > th dose independent rect. 23 23
398 698.89 temperature 20 270 > th dose independent rect. 17 12
411 699.04 atmosphere 1005 30 > th dose independent rect. 22 19
426 699.19 temperature 30 720 < th dose dependent rect. 22 3
431 699.26 temperature 20 270 > th dose independent rect. 17 14
469 699.56 temperature 15 270 > th dose dependent sin 8 NA
486 699.73 temperature 20 270 > th dose independent rect. 9 23
516 699.98 atmosphere 1000 90 < th dose independent rect. 23 5
531 700.04 atmosphere 1000 90 > th dose dependent rect. 23 12
534 700.05 atmosphere 1010 90 < th dose dependent rect. 20 13
572 700.29 atmosphere 1005 10 > th dose independent rect. 9 19
573 700.29 temperature 20 720 > th dose dependent rect. 1 3
587 700.39 atmosphere 1000 10 < th dose independent rect. 24 5
606 700.50 atmosphere 1010 90 < th dose dependent rect. 20 15
607 700.52 temperature 30 14400 > th dose dependent rect. 18 15
650 700.73 atmosphere 1005 1440 > th dose dependent rect. 19 1
660 700.77 temperature 25 720 < th dose dependent rect. 23 1
673 700.85 temperature 20 270 < th dose independent rect. 9 22
682 700.92 temperature 10 720 > th dose dependent rect. 20 8
755 701.26 atmosphere 995 10 > th dose dependent sin 7 NA
852 701.65 atmosphere 1000 270 < th dose independent rect. 24 1
929 701.94 atmosphere 1010 10 < th dose dependent rect. 18 14
941 702.01 temperature 30 14400 > th dose independent rect. 18 15
942 702.01 temperature 30 14400 > th dose dependent rect. 18 1
964 702.03 temperature 25 270 < th dose dependent rect. 2 12
982 702.09 temperature 20 270 < th dose independent no NA NA
987 702.10 temperature 20 270 < th dose independent rect. 13 23
988 702.10 temperature 20 270 < th dose independent rect. 17 23