Os05g0123400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0123400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.81 | 0.531 | 6.64 | 1.5 | 1.48 | -1.08 | -0.245 | -1.47 | 0.0896 | 17.5 | 24.4 | 1295 | -- | -- |
| 128.65 | 0.528 | 6.6 | 1.89 | 1.48 | -1.21 | -0.198 | -- | 0.177 | 17.5 | 24.72 | 1300 | -- | -- |
| 127.96 | 0.527 | 6.64 | 1.51 | 1.48 | -1.08 | -- | -1.45 | 0.0895 | 17.4 | 24.36 | 1296 | -- | -- |
| 128.76 | 0.528 | 6.6 | 1.89 | 1.48 | -1.21 | -- | -- | 0.177 | 17.5 | 24.7 | 1297 | -- | -- |
| 239.4 | 0.721 | 6.61 | 1.51 | -- | -1.3 | -- | -1.5 | 0.0981 | -- | 24.07 | 1286 | -- | -- |
| 181.67 | 0.632 | 6.63 | 1.5 | 1.6 | -- | 0.053 | -- | 0.0186 | 17.1 | -- | -- | -- | -- |
| 181.67 | 0.631 | 6.63 | 1.5 | 1.6 | -- | -- | -- | 0.0188 | 17.1 | -- | -- | -- | -- |
| 240.41 | 0.722 | 6.56 | 1.92 | -- | -1.44 | -- | -- | 0.202 | -- | 24.19 | 1286 | -- | -- |
| 216.64 | 0.686 | 6.64 | -- | 1.56 | -0.7 | -- | -- | -0.122 | 17.2 | 28.55 | 2974 | -- | -- |
| 315.81 | 0.83 | 6.61 | 1.44 | -- | -- | -- | -- | -0.0218 | -- | -- | -- | -- | -- |
| 241 | 0.726 | 6.67 | -- | 1.57 | -- | -- | -- | -0.148 | 17.1 | -- | -- | -- | -- |
| 330.12 | 0.846 | 6.63 | -- | -- | -1.01 | -- | -- | -0.0836 | -- | 24.7 | 1278 | -- | -- |
| 370.74 | 0.899 | 6.65 | -- | -- | -- | -- | -- | -0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 2 | 127.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 4 | 128.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 7 | 128.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 10 | 128.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 16 |
| 26 | 128.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 32 | 128.46 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 35 | 128.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 5 |
| 53 | 128.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 21 |
| 58 | 128.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 100 | 128.80 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 105 | 128.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 106 | 128.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 112 | 128.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 159 | 128.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 255 | 129.19 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 4 |
| 303 | 129.32 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 341 | 129.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 388 | 129.67 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 389 | 129.67 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 394 | 129.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 410 | 129.77 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 495 | 130.04 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 583 | 130.31 | temperature | 20 | 1440 | > th | dose dependent | sin | 4 | NA |
| 612 | 130.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 953 | 131.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 999 | 131.26 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 8 |