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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0122700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Low-temperature induced protein lt101.2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.63 (0.046) R2 : 0.489
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.48 (0.115) R2dC : 0.199 R2C : 0.289
β3 : -2.66 (0.211) R2dE : 0.207 R2E : 0.253
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.469 (0.1) R2dN8 : 0.0347 R2N8 : -0.0123
σ : 0.855
deviance : 337.27
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_____
C
peak time of C : 14.2
E
wheather : temperature
threshold : 28.59
memory length : 98
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.12
open length of G : 21.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
335.22 0.86 5.65 -0.138 1.47 -2.6 -0.247 1.35 -0.504 14.3 29.21 93 1.1 22
336.93 0.855 5.63 0.0496 1.5 -2.61 -0.377 -- -0.459 14.2 28.75 97 1.15 21.8
335.38 0.853 5.65 -0.142 1.47 -2.58 -- 1.38 -0.504 14.3 29.12 95 1.09 21.9
337.22 0.855 5.63 0.0461 1.48 -2.64 -- -- -0.463 14.3 28.62 98 1.13 21.8
420.97 0.956 5.69 -0.267 -- -3.39 -- 0.593 -0.684 -- 29.22 74 0.466 23.3
436.09 0.979 5.54 0.612 1.94 -- 0.234 -- -0.0191 15 -- -- -- --
436.28 0.978 5.54 0.617 1.94 -- -- -- -0.0177 15 -- -- -- --
420.57 0.955 5.69 -0.228 -- -3.41 -- -- -0.691 -- 29.4 83 0.55 23.1
337.27 0.855 5.63 -- 1.48 -2.66 -- -- -0.469 14.2 28.59 98 1.12 21.8
651.32 1.19 5.54 0.534 -- -- -- -- -0.0681 -- -- -- -- --
446.3 0.988 5.55 -- 1.93 -- -- -- -0.0864 15 -- -- -- --
422.17 0.957 5.69 -- -- -3.43 -- -- -0.689 -- 29.46 82 0.55 23.1
658.84 1.2 5.56 -- -- -- -- -- -0.127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 336.57 temperature 30 90 < th dose dependent rect. 1 22
2 343.37 temperature 30 10 < th dose dependent rect. 5 17
3 343.41 temperature 15 270 > th dose dependent rect. 20 16
12 346.02 temperature 15 10 > th dose dependent rect. 8 21
15 346.49 temperature 30 270 < th dose dependent rect. 1 19
19 346.79 temperature 30 90 < th dose dependent rect. 4 18
22 347.22 temperature 10 270 > th dose dependent rect. 7 18
35 349.39 temperature 15 10 > th dose dependent rect. 23 16
36 349.50 temperature 25 90 < th dose independent rect. 4 18
37 349.54 temperature 15 10 > th dose dependent rect. 8 18
39 349.62 temperature 30 10 < th dose dependent rect. 2 20
41 349.78 temperature 10 270 > th dose dependent rect. 6 20
46 350.15 temperature 20 270 > th dose independent rect. 21 16
90 354.64 temperature 30 270 < th dose dependent rect. 1 8
111 356.18 temperature 30 10 < th dose dependent rect. 5 15
130 356.94 temperature 25 90 < th dose independent rect. 1 22
209 361.06 temperature 10 43200 > th dose independent rect. 10 6
290 364.18 wind 9 14400 < th dose independent rect. 24 3
292 364.29 temperature 10 90 > th dose dependent sin 5 NA
325 365.48 radiation 1 270 < th dose independent sin 1 NA
327 365.50 radiation 1 270 > th dose independent sin 1 NA
336 365.69 temperature 30 90 < th dose dependent sin 5 NA
337 365.69 radiation 1 270 < th dose dependent sin 1 NA
350 365.92 radiation 1 270 < th dose dependent rect. 4 15
353 366.03 temperature 30 90 < th dose dependent rect. 15 20
366 366.25 temperature 25 10 < th dose independent rect. 5 18
436 368.49 temperature 20 270 > th dose independent rect. 6 20
440 368.66 wind 7 14400 > th dose dependent rect. 7 6
455 368.92 temperature 30 90 < th dose dependent rect. 11 23
462 369.12 wind 7 14400 > th dose independent rect. 9 4
466 369.16 wind 7 14400 > th dose independent rect. 7 6
482 369.33 radiation 1 270 < th dose independent rect. 4 15
491 369.47 radiation 20 4320 < th dose independent rect. 23 7
493 369.57 wind 7 14400 < th dose independent rect. 7 6
495 369.65 temperature 30 90 < th dose dependent rect. 14 23
496 369.67 temperature 30 10 < th dose dependent rect. 5 13
499 369.70 temperature 25 270 < th dose independent rect. 2 7
502 369.74 wind 7 14400 < th dose independent rect. 9 4
518 369.98 temperature 30 10 < th dose dependent rect. 14 22
556 370.61 temperature 10 270 > th dose dependent rect. 6 8
560 370.64 temperature 20 4320 < th dose dependent rect. 20 1
611 371.52 temperature 20 270 > th dose independent rect. 6 9
613 371.57 wind 7 14400 > th dose dependent rect. 22 16
647 371.92 temperature 30 90 < th dose dependent rect. 4 7
676 372.27 humidity 60 10 > th dose dependent rect. 5 17
714 372.84 temperature 30 10 < th dose dependent rect. 5 7
722 372.93 temperature 30 90 < th dose dependent no NA NA
766 373.35 wind 7 14400 > th dose independent rect. 23 15
776 373.43 temperature 15 30 > th dose dependent rect. 3 23
799 373.64 wind 7 14400 < th dose independent rect. 23 15
809 373.68 wind 7 14400 < th dose independent rect. 1 13
816 373.73 temperature 25 90 < th dose independent rect. 4 7
830 373.81 temperature 20 10 > th dose independent rect. 8 21
842 373.89 humidity 80 90 > th dose dependent rect. 5 17
844 373.91 wind 1 43200 > th dose independent rect. 12 16
883 374.23 wind 1 43200 < th dose independent rect. 12 16
885 374.24 temperature 10 270 > th dose dependent rect. 20 6
910 374.51 temperature 30 90 < th dose dependent rect. 9 23
925 374.62 wind 7 14400 > th dose dependent rect. 5 2
967 374.97 temperature 25 90 > th dose independent rect. 7 23
986 375.13 wind 7 14400 > th dose independent rect. 5 3
998 375.21 temperature 30 10 < th dose dependent no NA NA